Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02887 ATGCTACAAAACATGGATGATGGAGAAATTTCAAATGCTTTCCCTCTTCAGAACCCATCAACTGCTGCATCTAACCAACCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAGGTCATAGCCTTATCACCCAAGACCCTGATGGCCACAAACAGATTCGTGTGTGAAATTTGTCTCAAGGGTTTCCAAAGGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGATCAAGCAAAGAAGTAAGGAAGAGAGTTTATGTGTGTCCAGAGAAGACTTGTGTCCACCACCACCCTTCAAGGGCTCTGGGAGACTTAACTGGGATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGTTTCATCACTCACAGGGCTTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGGGTGAACGCAGCATCAAACATTAGCAACTACAGCATCATGCAAAACCCTCTAGGTTCAAATATGGCAACCCATTTTTCATCGTTTTATAAGCCAAATTCGTGCCCCGAGGAACCAGTCCCATGTAACCAAACATCTAAGGGGCTATCCCTTTGGATGAGTCAAACATCTCAGGCTCATCAAACAATTGCTAACAACAACTTGCATGAGTTTCATCAACTTGGGTCTGCCACAAGCCCAACCTCAATTTATGGTGGAAATCCACTTGCACCTTGCTCAATTCCACCACCCTCTAATTACCAACTAAATTGGGTGTTTGGAAATAAAGTGTCCCCCAATGGAAGCCAAGAGCTAAGTAGCACTGCTTCACTTCCACTAGTGAACAATATTGTTAAGGATAACCCAAACCTGCAACTCATAAGTGTTCCTTCCTTGTATAGTTCACAACACCAATCCCATCAAACAACCTCAGCGAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATTATTCCTCGGGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGTATGTACGGTTCAAGTTCTGTGCTCACAGGTCATGAGGGAGAGAATAATTATTCCGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCACGTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGTGCCAACCATTTACCACCCTTCATCAACCAACGGATGGACTTAA 1374 0.4498 MLQNMDDGEISNAFPLQNPSTAASNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNISNYSIMQNPLGSNMATHFSSFYKPNSCPEEPVPCNQTSKGLSLWMSQTSQAHQTIANNNLHEFHQLGSATSPTSIYGGNPLAPCSIPPPSNYQLNWVFGNKVSPNGSQELSSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGMYGSSSVLTGHEGENNYSGDLSQMPPTKRRHVQNEESAWGQTRDFLGVGVPTIYHPSSTNGWT 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02887 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 446 IPR031140 -
Viun5g02887 457 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Viun5g02887 457 Gene3D Classic Zinc Finger 129 196 - -
Viun5g02887 457 MobiDBLite consensus disorder prediction 1 43 - -
Viun5g02887 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Viun5g02887 457 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Viun5g02887 457 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Viun5g02887 457 MobiDBLite consensus disorder prediction 1 28 - -
Viun5g02887 457 FunFam protein indeterminate-domain 12-like 39 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02887 Viun-Chr5 40301560 40305237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02887 27 456 IDZ Gene Family AT1G03840 53.638 1.51e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g02887 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02887 K25870 - gmx:100778666 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02887 5 40301560 40305237 Viun5g02887 5 40301560 40305237 ECH