Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02870 ATGAGTTACTTCGACAACGATCACGACCACTCTCCGTTCCCAACATTCCAGAACCACAATGACTTCAACCGGAGGATACTAATCACCGCCATAGTTTCCCTATCAGTGGTTCTGGTTTTAGTGTTTGTTCTTCACATCTACGCAAGGTTTTTTCTGAGGCGTCAAACTCGGCGCCGGAGCGCCATATACCAACTCAGTCTCAACGTGGCTCACGCGCAAGCCCAACCACCAAACACCGGCCTCGACCCTGCCCTCATCACCGCTCTCCCCACCTTCCCCTTCAAACACCAGAACGACGCCGTTGAGTGCGCCGTCTGTTTGAGCGTTCTTGAAGACGGAGAACACGTCAGACTTCTTCCTAATTGCAAGCATAGCTTCCACGTTGGCTGCATCGACGCGTGGCTCGCCTCGCACTCCACGTGTCCCCTTTGTCGGACCAAAGCCGAACCTCTCCGACTTGAACCGGTCCAGCGCGAGGACCCCACCCGGTTGGCTCTTCCCACCGCCCCGGTATTGTTTGAAAACGTGGAAGGAACATCCGACGGTGGTAATGGGTCACCTAAAATCAACGGCTCCAATTCCCGGTTGAGTTCGTTTCGAAGAATTCTCAGTAGAGAGAGATCGTTGAGGAGAATCCAACCTTCTACGCATGATGATGTTGAACAAGACTTAGAGAGACAGTGA 684 0.5307 MSYFDNDHDHSPFPTFQNHNDFNRRILITAIVSLSVVLVLVFVLHIYARFFLRRQTRRRSAIYQLSLNVAHAQAQPPNTGLDPALITALPTFPFKHQNDAVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDAWLASHSTCPLCRTKAEPLRLEPVQREDPTRLALPTAPVLFENVEGTSDGGNGSPKINGSNSRLSSFRRILSRERSLRRIQPSTHDDVEQDLERQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02870 227 CDD RING-H2_EL5-like 102 145 - -
Viun5g02870 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 150 IPR013083 -
Viun5g02870 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 162 - -
Viun5g02870 227 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Viun5g02870 227 SMART ring_2 103 144 IPR001841 -
Viun5g02870 227 MobiDBLite consensus disorder prediction 175 194 - -
Viun5g02870 227 FunFam E3 ubiquitin-protein ligase ATL6 69 150 - -
Viun5g02870 227 MobiDBLite consensus disorder prediction 179 194 - -
Viun5g02870 227 Pfam Ring finger domain 102 145 IPR001841 -
Viun5g02870 227 SUPERFAMILY RING/U-box 96 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02870 Viun-Chr5 40170484 40171852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02870 1 227 C3H Transcription Factor Family AT2G42360 44.672 6.68e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02870 K19038 - gmx:100780265 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02870 5 40170484 40171852 Viun5g02870 5 40170484 40171852 ECH