Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02868 ATGGGGATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCGCACACTGCAATTCAGTTCTACGATGTTCAGGACCGTTTAGGGTATGACAGACCCAGCAAGGCCGTGGACTGGCTCATAAAGAAGGCCAAGAATGCCATTGACAAGCTCGCTGAGCTTCCTCCATGGCACCCTACTGCCAACGCTGCAGATGCAGAGAACAACCATACCAATGCAGGGTCTAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAACGCCAATTAGGTGAGGACCATGATAACCACCATTCACCTTTCATTCCTGCACCTATTGACACTGATGCAATAGCCTTCTTCCCCACAACCACTGCCACCTCCTCCATCAATTTTCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCTCTCCACTCCTTCCAAGACCCTGGCCTGATTCATGGCCAGTCCCAAGCAAATGCGAACCAAACACAAACACCTTCCAATCACCAAACCCTCTTTTCTGGCTCAACCCAAGTGGGGTTTGAAGTCAATTACCCCAGGATTCTGACTTGGAACAATGATGCAGGCACGGATATGAACAGAACTGGGTACATGGTCAACTCACCAGCGCTTCTAGGCCAAGGTGGTTCTGCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCTTCCTCAGAACATCACAAGTCACAACCTATTCAACAGGCTTCCATCTTTGGCAGCAGGTTTCTGTCTGATGCATTGCCAGGGTTCTGCATTCCAGCTAGAATTCAAGGCGAGGATGGGAGCCATGGTGTTGGTCCCGACAAGACATCATCTTCTTCTCCTAATTCTCATCATCGACCACAAACGTGA 1044 0.4943 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPTANAADAENNHTNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHSPFIPAPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHGQSQANANQTQTPSNHQTLFSGSTQVGFEVNYPRILTWNNDAGTDMNRTGYMVNSPALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSSEHHKSQPIQQASIFGSRFLSDALPGFCIPARIQGEDGSHGVGPDKTSSSSPNSHHRPQT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02868 347 Pfam TCP family transcription factor 23 127 IPR017887 -
Viun5g02868 347 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Viun5g02868 347 MobiDBLite consensus disorder prediction 265 296 - -
Viun5g02868 347 MobiDBLite consensus disorder prediction 330 347 - -
Viun5g02868 347 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 298 IPR005333 GO:0003700
Viun5g02868 347 MobiDBLite consensus disorder prediction 318 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02868 Viun-Chr5 40151487 40154540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02868 8 343 TCP Transcription Factor Family AT3G15030 43.424 1.72e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun5g02868 TCP 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02868 - - pvu:PHAVU_005G097200g 647.506