Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02867 ATGGGGATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCGCACACTGCAATTCAGTTCTACGATGTTCAGGACCGTTTAGGGTATGACAGACCCAGCAAGGCCGTGGACTGGCTCATAAAGAAGGCCAAGAATGCCATTGACAAGCTCGCTGAGCTTCCTCCATGGCACCCTACTGCCAACGCTGCAGATGCAGAGAACAACCATACCAATGCAGGGTCTAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAACGCCAATTAGGCACGGATATGAACAGAACTGGGTACATGGTCAACTCACCAGCGCTTCTAGGCCAAGGTGGTTCTGCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCTTCCTCAGAACATCACAAGTCACAACCTATTCAACAGGCTTCCATCTTTGGCAGCAGGTTTCTGTCTGATGCATTGCCAGGGTTCTGCATTCCAGCTAGAATTCAAGGCGAGGATGGGAGCCATGGTGTTGGTCCCGACAAGACATCATCTTCTTCTCCTAATTCTCATCATCGACCACAAACGTGA 717 0.5007 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPTANAADAENNHTNAGSSDMAIAEQSESSGYNFQLQRQLGTDMNRTGYMVNSPALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSSEHHKSQPIQQASIFGSRFLSDALPGFCIPARIQGEDGSHGVGPDKTSSSSPNSHHRPQT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02867 238 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Viun5g02867 238 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 171 IPR005333 GO:0003700
Viun5g02867 238 MobiDBLite consensus disorder prediction 208 238 - -
Viun5g02867 238 MobiDBLite consensus disorder prediction 156 187 - -
Viun5g02867 238 MobiDBLite consensus disorder prediction 221 238 - -
Viun5g02867 238 Pfam TCP family transcription factor 23 115 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02867 Viun-Chr5 40151484 40154540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02867 8 104 TCP Transcription Factor Family AT3G15030 80.198 5.00e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun5g02867 TCP 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02867 - - pvu:PHAVU_005G097200g 260.766