Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02834 ATGGACTCCATCGCCGGAGCTCCGCCTCACACAGCAACCCCTCCGTCGTCTCGGCCGTCGCCGTTTCCCGGCCGGGAAGACTGCTGGTCGGAGGAAGCCACGTTCACGCTCATCGAGGCATGGGGCGAGCGCCACCTCGAACTCAACCGCGGGAACCTCCGCCAGAGGCACTGGCAGGAGGTCGCCGACACCGTCAACGCACGTCACGGCCACGCCGGCGCCAGGGCCCGCCGCACCGACGTGCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGGCGATTCCGCCACCGCCTGGCCGTTCTTCCGCCGCCTCGAGTTCCTCATCGGCGACAATTTCCCGGCGAAGAAGCCCTCCCCGCCGGAGTCAGGCTCCGCCGATCGACGGAGCACTCCTCCGGCGAAGTCCCCGGCGTGGGCCCTCATTCCGGTGGGTCCTCGATCCCGCTCCCAGAAGCGGCCGACGCCGGCGGCGCCAGCGGCAGAGAGCGTTGCCGACTCATACTTCCGGCGGAATTTCTCGGTTTTTGCGGCGGCGGCGGCGGCCGCCGCGGAGGCTGATAGCGATAATTCGAACGGTTCCAAATGGAGCAGTGGGAGTGAGAAGAGAGAGAAGAAGAAAAGAGGAAGGGATTGGGAATTTGGTTACAGAGAGGTTGCAGAAGCGTTGGAGAGGTTTGGGGAGATTTATGAGAGAGTTGAAGAAGCTAAACAGAGGCAAATGGTTGAGTTGGAGAAACAGAGAATGCAGTTTGCTAAGGATTTGGAAACCCAGAGAATGAAACTCTTCATGGAAACTCAGCTTCACTTGCAAAAAATGAATCGCTCCAACTCCAAGCGTTCTTCTGCAACTGACAGTGTCTCATAG 903 0.5991 MDSIAGAPPHTATPPSSRPSPFPGREDCWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVNARHGHAGARARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATAWPFFRRLEFLIGDNFPAKKPSPPESGSADRRSTPPAKSPAWALIPVGPRSRSQKRPTPAAPAAESVADSYFRRNFSVFAAAAAAAAEADSDNSNGSKWSSGSEKREKKKRGRDWEFGYREVAEALERFGEIYERVEEAKQRQMVELEKQRMQFAKDLETQRMKLFMETQLHLQKMNRSNSKRSSATDSVS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02834 300 MobiDBLite consensus disorder prediction 196 221 - -
Viun5g02834 300 Gene3D - 29 96 - -
Viun5g02834 300 FunFam trihelix transcription factor ASIL2 29 96 - -
Viun5g02834 300 Pfam Myb/SANT-like DNA-binding domain 26 119 IPR044822 -
Viun5g02834 300 MobiDBLite consensus disorder prediction 1 25 - -
Viun5g02834 300 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 289 IPR044823 -
Viun5g02834 300 Coils Coil 231 262 - -
Viun5g02834 300 MobiDBLite consensus disorder prediction 281 300 - -
Viun5g02834 300 MobiDBLite consensus disorder prediction 125 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02834 Viun-Chr5 39851139 39854902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02834 180 296 Trihelix Transcription Factor Family AT3G14180 38.655 6.50e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun5g02834 Myb_DNA-bind_4 2.4e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02834 - - gmx:100784918 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02834 5 39851139 39854902 Viun5g02834 5 39851139 39854902 ECH