Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02822 ATGGATGAGAGAATTTGTATATCTGAGGAAGAAAAGAGTGAAAGTAGCAGACCCTCTTCTGCAAGTGTTAGAAGAAAACGTTCATTCTTCGATTTGAATGAAGAAGCTGTGGATGATGGAGATGGTAGCACCAGTGATGACCCTATCAGTAACAATGAGATATCATCTCAAGAGGGTAATTTGAGTAGTAACAATAACTCAAGTGATGAAGGGAAAGAGCGTGCAAACGCTGTTAGGCAATATGTTCGGTCCAAAATGCCAAGACTCCGTTGGACCCCTGATCTTCATCTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATTTACAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTGTCTCAGAATAGGGCAATGCAAGGAAGACACAGTATTTTCGATATGTACGGAAGACTTAATGGCCCACGACAATTTGTGGTTGATAACAGAAATTATGTTCCATCATCTCTGCTCATGGAACAATCACCTTATCAGATCAGTGCTCATGGCTCTTCAAGATTACACCCCACTGGGTTTTTCAATAGTCACCACATGATGATAAGATCAAGTTCAGTGTGGGATAAAGATTTGTGTAATTATCAGTATCAACGAAGTTCTTGCAGTCCTAACCTCACTGGCCACGCCAAGTTTGATGCTGAGCTACGTGATGTTAAAAATCGAATGCCAGAATTCCTTAATCAGGTGCAAGTATGGAAGCAAGGTGAAATCAAAGATGAATATGAAAAGAAAGGGCCTCTGAGTTTTTTGGAGCTGAATTTAAGTCAAGATTCAAGAAAAGTTAACGATGACCAAATGAAGAAAGATCCTGCAGAAAGTGAACAAGGAATTAATACCAGACTCTCTCTTTCACTGTTCACTTCTTCATCCTCAAATTCATCACAACAAGCACAGTGTAGTGAAAACCATAAAGACGATACCAATGTTGAGAGTTTTTGTTTACAAAATTATGCACCGAGGAGTCGTTTGGGCTGA 1083 0.4044 MDERICISEEEKSESSRPSSASVRRKRSFFDLNEEAVDDGDGSTSDDPISNNEISSQEGNLSSNNNSSDEGKERANAVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRAMQGRHSIFDMYGRLNGPRQFVVDNRNYVPSSLLMEQSPYQISAHGSSRLHPTGFFNSHHMMIRSSSVWDKDLCNYQYQRSSCSPNLTGHAKFDAELRDVKNRMPEFLNQVQVWKQGEIKDEYEKKGPLSFLELNLSQDSRKVNDDQMKKDPAESEQGINTRLSLSLFTSSSSNSSQQAQCSENHKDDTNVESFCLQNYAPRSRLG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02822 360 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g02822 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Viun5g02822 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 64 238 IPR046955 GO:0003700
Viun5g02822 360 Gene3D - 86 143 - -
Viun5g02822 360 MobiDBLite consensus disorder prediction 44 71 - -
Viun5g02822 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Viun5g02822 360 MobiDBLite consensus disorder prediction 1 76 - -
Viun5g02822 360 FunFam Myb family transcription factor 85 143 - -
Viun5g02822 360 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Viun5g02822 360 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02822 Viun-Chr5 39781779 39785729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02822 75 146 G2-like Transcription Factor Family AT2G42660 79.167 3.13e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun5g02822 Myb_DNA-binding 5.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02822 - - vun:114183967 674.47