Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02820 ATGGATGAGAGAATTTGTATATCTGAGGAAGAAAAGAGTGAAAGTAGCAGACCCTCTTCTGCAAGTGTTAGAAGAAAACGTTCATTCTTCGATTTGAATGAAGAAGCTGTGGATGATGGAGATGGTAGCACCAGTGATGACCCTATCAGTAACAATGAGATATCATCTCAAGAGGGTAATTTGAGTAGTAACAATAACTCAAGTGATGAAGGGAAAGAGCGTGCAAACGCTGTTAGGCAATATGTTCGGTCCAAAATGCCAAGACTCCGTTGGACCCCTGATCTTCATCTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATTTACAGTTATATTTTGAAATTCAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTGTCTCAGAATAGGGCAATGCAAGGAAGACACAGTATTTTCGATATGTACGGAAGACTTAATGGCCCACGACAATTTGTGGTTGATAACAGAAATTATGTTCCATCATCTCTGCTCATGGAACAATCACCTTATCAGATCAGTGCTCATGGCTCTTCAAGATTACACCCCACTGGGTTTTTCAATAGTCACCACATGATGATAAGATCAAGTTCAGTGTGGGATAAAGATTTGTGTAATTATCAGTATCAACGAAGTTCTTGCAGTCCTAACCTCACTGGCCACGCCAAGTTTGATGCTGAGCTACGTGATGTTAAAAATCGAATGCCAGAATTCCTTAATCAGGTGCAAGTATGGAAGCAAGGTGAAATCAAAGATGAATATGAAAAGAAAGGGCCTCTGAGTTTTTTGGAGCTGAATTTAAGTCAAGATTCAAGAAAAGTTAACGATGACCAAATGAAGAAAGATCCTGCAGAAAGTGAACAAGGAATTAATACCAGACTCTCTCTTTCACTGTTCACTTCTTCATCCTCAAATTCATCACAACAAGCACAGTGTAGTGAAAACCATAAAGACGATACCAATGTTGAGAGTTTTTGTTTACAAAATTATGCACCGAGGAGTCGTTTGGGCTGA 1101 0.4005 MDERICISEEEKSESSRPSSASVRRKRSFFDLNEEAVDDGDGSTSDDPISNNEISSQEGNLSSNNNSSDEGKERANAVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQLYFEIQMYRSKKLDESGQVLSQNRAMQGRHSIFDMYGRLNGPRQFVVDNRNYVPSSLLMEQSPYQISAHGSSRLHPTGFFNSHHMMIRSSSVWDKDLCNYQYQRSSCSPNLTGHAKFDAELRDVKNRMPEFLNQVQVWKQGEIKDEYEKKGPLSFLELNLSQDSRKVNDDQMKKDPAESEQGINTRLSLSLFTSSSSNSSQQAQCSENHKDDTNVESFCLQNYAPRSRLG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02820 366 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g02820 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 141 IPR006447 GO:0003677
Viun5g02820 366 Pfam Myb-like DNA-binding domain 89 138 IPR001005 -
Viun5g02820 366 Gene3D - 86 149 - -
Viun5g02820 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Viun5g02820 366 MobiDBLite consensus disorder prediction 44 71 - -
Viun5g02820 366 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
Viun5g02820 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 64 241 IPR046955 GO:0003700
Viun5g02820 366 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02820 Viun-Chr5 39781779 39785729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02820 75 152 G2-like Transcription Factor Family AT2G42660 73.077 9.87e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun5g02820 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02820 - - vun:114183967 692.96