Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02816 ATGGCAAACATTTCTTGGGAGAAGGTTTTGTACGAATTTCCAGCAAATCTCAGAATCCTCGCCATCGACACCGATCCTACTGTTCTTGAACTCATCAAGAAGATATGTAATGAGTTAGGCTATGAAGTGATCACATGCACGGAATCGCTACGTGCTAGTGATATTTTGCGGGAAAGAAAAGTGGGTATTGATTTGGTGATGATGGAGGTTCATATGCCAAAGATGAATGGCTTCGAATTCCTATTTGCCAACCAGGAAATTGACGTTCCTGTCATCATGATGTCTTTGGATGATAACAAGAAATCTGTGATGAAGAGTATAAAACTTGGAGGGTGTGATTACTGGATTAAGCCTTTGCATGAGGATCGAGTGAAGAACATGTGGACACATGTTGTTAGGAAAAGGATGCGAAATCATGTTGGTAATGTTGAAGCTTCAAGTGAAGTTGATAATGTTGGTGAATCATCACCTTCTTCCAGAAAGAAACCTCGTATGGTATGGACATCAGAACTGCATGGTGAATTTGTGAAAGCTGTCAATCAAATTGGACTTGCTAAGGCTGTGCCAAACAAAATTTCTGAGCTCATGAATGTGCCTGGTTTGACAAGAAGCCATGTCGCTAGTCACTTACAGAAATACAGAAATACTCTGAAGACAAAACCACTGCAGAAGCATGTTCATGCAGAAGAAACTTCGATTATGGCACTTGATCAGCATTTTCCACAGTCTTCGGAGACTATGCTTAACAGTGTGTCAGTGGATACAATATTGCAGCAACAAGAAATGCAGCAGTGGATGGATTCTTTCTTTTTATGA 816 0.4044 MANISWEKVLYEFPANLRILAIDTDPTVLELIKKICNELGYEVITCTESLRASDILRERKVGIDLVMMEVHMPKMNGFEFLFANQEIDVPVIMMSLDDNKKSVMKSIKLGGCDYWIKPLHEDRVKNMWTHVVRKRMRNHVGNVEASSEVDNVGESSPSSRKKPRMVWTSELHGEFVKAVNQIGLAKAVPNKISELMNVPGLTRSHVASHLQKYRNTLKTKPLQKHVHAEETSIMALDQHFPQSSETMLNSVSVDTILQQQEMQQWMDSFFL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02816 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 218 IPR017930 -
Viun5g02816 271 MobiDBLite consensus disorder prediction 145 163 - -
Viun5g02816 271 FunFam Two-component response regulator 158 220 - -
Viun5g02816 271 SMART REC_2 17 128 IPR001789 GO:0000160
Viun5g02816 271 MobiDBLite consensus disorder prediction 145 164 - -
Viun5g02816 271 SUPERFAMILY Homeodomain-like 160 218 IPR009057 -
Viun5g02816 271 Pfam Response regulator receiver domain 19 126 IPR001789 GO:0000160
Viun5g02816 271 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 230 IPR045279 GO:0009736
Viun5g02816 271 ProSiteProfiles Response regulatory domain profile. 18 132 IPR001789 GO:0000160
Viun5g02816 271 Gene3D - 16 147 - -
Viun5g02816 271 Gene3D - 158 219 - -
Viun5g02816 271 SUPERFAMILY CheY-like 16 136 IPR011006 -
Viun5g02816 271 CDD REC_typeB_ARR-like 19 132 - -
Viun5g02816 271 Pfam Myb-like DNA-binding domain 164 214 IPR001005 -
Viun5g02816 271 NCBIfam myb-like DNA-binding domain, SHAQKYF class 162 215 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02816 Viun-Chr5 39747334 39748517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02816 8 242 Response Regulator Gene Family AT4G31920 38.672 1.60e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun5g02816 Response_reg 2.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02816 - - vra:106778511 391.349