Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02815 ATGTCAGGAGTGGGACCTCTCTCGCAGGATTGGGAACCGGTGGTGCTTCGCAAGAAAGCCCCCACTGCCGCCGCCCGCAAGGATGAGAAAGCCGTCAACGCCGCTCGCCGCTCCGGCGCCGACATCGACACCATAAAAAAATATAATGCTGGAACAAACAAGTCCGCTTCTAGTAGCACTTCATTGAATACTAAGAGGCTGGATGATGATACCGAGAATCTAGCTCATGATCGAGTACCAACTGAACTTAAGAAAGCTATAATGCAGGCCAGGATGGACAAGAAACTAACTCAGGCTCAGCTTGCTCAATTGATCAATGAGAAGCCTCAAATAATCCAGGAGTACGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAATGA 429 0.5012 MSGVGPLSQDWEPVVLRKKAPTAAARKDEKAVNAARRSGADIDTIKKYNAGTNKSASSSTSLNTKRLDDDTENLAHDRVPTELKKAIMQARMDKKLTQAQLAQLINEKPQIIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02815 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Viun5g02815 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Viun5g02815 142 MobiDBLite consensus disorder prediction 50 77 - -
Viun5g02815 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Viun5g02815 142 MobiDBLite consensus disorder prediction 21 39 - -
Viun5g02815 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Viun5g02815 142 MobiDBLite consensus disorder prediction 50 64 - -
Viun5g02815 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Viun5g02815 142 Coils Coil 87 107 - -
Viun5g02815 142 CDD HTH_XRE 85 135 IPR001387 -
Viun5g02815 142 Gene3D - 71 142 IPR010982 GO:0003677
Viun5g02815 142 MobiDBLite consensus disorder prediction 20 39 - -
Viun5g02815 142 SMART mbf_short4 86 141 IPR001387 -
Viun5g02815 142 FunFam Multiprotein bridging factor 1 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02815 Viun-Chr5 39741330 39744373 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Viun5g02815 MBF1 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02815 K03627 - gmx:100500420 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02815 5 39741330 39744373 Viun5g02815 5 39741330 39744373 ECH