Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02802 TTTCTTAGGACGTTTAAGCGAAGCGGCATTGGGATTGTCGTTTTTGGCCTTGGAAACGGAGTAGTAGGCGAACCAGAAGAAGAAGTATTCGAAGACGTTGAGCTGGATTTGGGAGGGGGAAGGGGAGGGCTTGAAAAGGGAGTGGCAGATATCGGAGAGAAGGCGAGAATCAGCGGCGTTGTTTTTGTATCGGAGGCCCTTCGTCGTGCTAAGTTCAAGTTCCTTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAGCCGTTCTGATTATCTCAAGTACAAGTCAGAGAACATGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAATCGTCAACCTGGAAGAGCTTTTCTGACGAGTGCTACTGCTTAA 411 0.4818 FLRTFKRSGIGIVVFGLGNGVVGEPEEEVFEDVELDLGGGRGGLEKGVADIGEKARISGVVFVSEALRRAKFKFLGRQKIIVSRKWGFTKFSRSDYLKYKSENMIVPDGVNAKLLGCHGPLANRQPGRAFLTSATA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02802 136 SUPERFAMILY Ribosomal protein L16p/L10e 33 91 IPR036920 GO:0003735|GO:0005840|GO:0006412
Viun5g02802 136 Gene3D - 94 129 - -
Viun5g02802 136 PANTHER 60S RIBOSOMAL PROTEIN L10 63 128 IPR001197 GO:0003735|GO:0005840|GO:0006412
Viun5g02802 136 FunFam 60S ribosomal protein L10, putative 90 132 - -
Viun5g02802 136 Gene3D Ribosomal protein L10e/L16 56 93 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02802 Viun-Chr5 39571537 39572596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02802 63 133 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 77.465 3.94e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02802 K02866 - gmx:100499685 137.502