Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02800 ATGGACATTTCTATGCACATATTAAATTGTTCATGGACATTTCTACAGAGAATGTGCAGAGTGTACCTAATCAACACCACTACCATGATGATGATGATGACAGACAAATTAGGGTTTAGAAGGTTTTGGGGCGGGTTGGGTCTTCCATCATCCTCTTCCAATGTTATCTCATCAGAATCTGCTTCTTCTTCCGATCATTCCTCGGGCACCATCCAAAACCAAGACTACAGGTACGATGTGTTCATCAGTTTCAGAGGTTCTGACACCCGCAACTCTTTCGTTGATCATCTCTACTCTCATCTTCTCCGGAAGGGTATTTTTGTCTTTAAAGACGACCACAAGCTCCGCAAAGGAGAATCCATTTCATCACAGCTTCTACAAGCAATCAGAGGTTCTCGAATTTCTATCATCGTCTTCTCCAAAGATTATCCTTCCTCCTCGTGGTGTTTGGACGAAATGGCCACTATAGCTGATTGCAAACAGCAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTGATCCATCTATCGTTAGACATCAGAGGGGGGCGTATAAGATTGATTTCCTTGTACACAGATTGAAATTAAGAAATGAGCCAAACAAGGTCCTTCGATGGGAGAAAGCTATGACGGATTTGGCCAACTCAACTGGTTGGGATGTCAGATACAAGCCAGAATTTCGGGAAATTGAAAAAATTGTTCAAGCGGTAATAGAAACACTGGGTCATAAATTCTCTGGGTTTGTTGATGATCTTATTGGGATACAACCACGCGTACAAGCATTAGAAGATAAATTAAGGTTAAGTTCAAAAAGTGATGATGTTCAAGTTTTAGGGATTTGGGGAATGGGTGGAATAGGAAAGACGACTCATGCAGTTGTGCTATATGACAAAATGTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGGGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTGGATGAAAAATGTCTAGATACATACAGTCCTATTGAAATATCAGGGATTGTAAGAAATCGGCTACATAAGATAAAGGTTCTAATAGTTCTTGACAATGTTGATGAATTAGAGCAATTGCAGGAACTGGCAATAAATTCTAAATTGCTTTTCAGAGGAAGTAGAATGGTTATAATCAGTAGGGATGAGCATATCCTAAAAGTTTATGGAGCTCATGTAATACACGAGGTTTCATTAATGAATGATAAAGATGCTCGTGAATTGTTTTATACAAAAGCGTTCGAAAGTGAAGAGCAAAACAGTAGTAGCTGTGTGGAGTTGATTCCTGAGGTACTCAAATATGCCCAATGTCTTCCATTAGCAGTTAGAGTGATAGGGTCTTTCTTGTGTAGAAGAGATTCTAGTGAATGGAGAGATACTTTGGATAGATTTGAGAACAATCCAGATAATAAAATCATGGATGTACTTCAAATAAGTTTTGATGGGCTACACTATACGGAAAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGAAGAGAGGGAGGATTATGTTAAGCGAATTCTGGAGTGTTGTGGATTACACCCTCATATTGGAATTCAAAGAATGATTGAGAAATCTCTCATAACAATTAGGGATCAACAAATTCATATGCATGATATGTTGCAAGAATTGGGGAAGAAGATTGTTCGCAACCAATGTCCAGAAGAACCAGAATCATGGAGTAGAATATGGCTTTATGAAGATTTCTTTCATGTGTTGACGACCCAAACGGGAACAAATGATGTTAAAGCCATAGTTCTAAATGAAAAGGAAGCTATTTCAGAATGTAGCATCGACGGATTGTCAAAAATGAAGAACCTTAAATTACTCATATTATATCATAAAAGGTTTTCCGGAAGCCTTAATTTTCTTTCTCAGAAGCTGCGATATTTCTTGTGGCATGATTATCCTTTTGCTTCTTTGCCATCAAGTTTTGCAGCCTCTGGCCTTGTGGAATTGAACATGCCTAATAGTAGCATCAACTGCTTATGGGAAGGCCGCAAGGATTTCCCATGTCTGAAAAGAATGGATTTGAGTAACTCAAAATATCTTACGGAGACTCCTGATTTTACTGGGGTCCCAAATCTTGAGCGTCTGGATCTTTCAGGATGCACAGATTTATCGTTTGTGCACCCTTCAATTGGGCTTCTTCAACAGCTTGCTTTCTTGAGTTTAAGAAATTGTACTAATCTAATCAGCTTCAAATTAGGCAACGGATTTAATCTAAGTTCTTTGAGAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACACGCCAGATTTTACAGGGACAACAATTCTTGAGTACCTTGACTTCGATGGATGTACAAGTTTATCCTCGGTTCATGAATCTATTGGAGTCCTTGCAAAGCTTACATTCTTGAGCTTGAGAGACTGCACAAGCCTTGCTAGTATACCTAGCAACAATAATATCATGAAATCTCTTCAGACTCTAGATTTCTCTGGCTGTTTTCAACTTACTGATTTGTCCTTACGGTTTTTCATTTCTTTATCCATGACCTCTTTAATTCTTTTGGACATAGGCTTCTGCAATCTACTTGAAGTACCTAATGCTATTGGAGACTTGTTGTGTTTAGAAAGACTGAATCTGCAGGGAAACAATTTTGTTGCTATACCACCTTCCATTAGCAGGCTTAAGAGTCTAGCGTATTTAAACGTGTCCCATTGCCATACGCTTCAATATTTGCCTAACCTTTCAAAAATAAGTACTTCATCAACTGGAAGGTACTTCAAAACGGTATCTGGATCTCGTGATCACAGAATCCATGTTCTTTTCGGTGTGGCTTTGACATTGTTGTTCCTTGGGGTTTGGAATTTCCAAGGTCTTCTTCACATCCGTTTTATCTATCTTTTGAAAGTGAAGACACAGAAGAATACTTCGACATGCCACTGA 2961 0.383 MDISMHILNCSWTFLQRMCRVYLINTTTMMMMMTDKLGFRRFWGGLGLPSSSSNVISSESASSSDHSSGTIQNQDYRYDVFISFRGSDTRNSFVDHLYSHLLRKGIFVFKDDHKLRKGESISSQLLQAIRGSRISIIVFSKDYPSSSWCLDEMATIADCKQQSNQTVFPVFYDVDPSIVRHQRGAYKIDFLVHRLKLRNEPNKVLRWEKAMTDLANSTGWDVRYKPEFREIEKIVQAVIETLGHKFSGFVDDLIGIQPRVQALEDKLRLSSKSDDVQVLGIWGMGGIGKTTHAVVLYDKMSHRFDASCFIEDVSKLYRDGGHTAVQKQIIHQTLDEKCLDTYSPIEISGIVRNRLHKIKVLIVLDNVDELEQLQELAINSKLLFRGSRMVIISRDEHILKVYGAHVIHEVSLMNDKDARELFYTKAFESEEQNSSSCVELIPEVLKYAQCLPLAVRVIGSFLCRRDSSEWRDTLDRFENNPDNKIMDVLQISFDGLHYTEKEIFLHIACFFKEEREDYVKRILECCGLHPHIGIQRMIEKSLITIRDQQIHMHDMLQELGKKIVRNQCPEEPESWSRIWLYEDFFHVLTTQTGTNDVKAIVLNEKEAISECSIDGLSKMKNLKLLILYHKRFSGSLNFLSQKLRYFLWHDYPFASLPSSFAASGLVELNMPNSSINCLWEGRKDFPCLKRMDLSNSKYLTETPDFTGVPNLERLDLSGCTDLSFVHPSIGLLQQLAFLSLRNCTNLISFKLGNGFNLSSLRVLHFSGCTKLENTPDFTGTTILEYLDFDGCTSLSSVHESIGVLAKLTFLSLRDCTSLASIPSNNNIMKSLQTLDFSGCFQLTDLSLRFFISLSMTSLILLDIGFCNLLEVPNAIGDLLCLERLNLQGNNFVAIPPSISRLKSLAYLNVSHCHTLQYLPNLSKISTSSTGRYFKTVSGSRDHRIHVLFGVALTLLFLGVWNFQGLLHIRFIYLLKVKTQKNTSTCH 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02800 986 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 78 772 IPR044974 GO:0006952
Viun5g02800 986 Pfam TIR domain 78 245 IPR000157 GO:0007165
Viun5g02800 986 Gene3D - 75 244 IPR035897 -
Viun5g02800 986 SMART LRR_CC_2 901 921 IPR006553 -
Viun5g02800 986 SMART LRR_CC_2 708 730 IPR006553 -
Viun5g02800 986 SMART LRR_CC_2 828 853 IPR006553 -
Viun5g02800 986 SUPERFAMILY Toll/Interleukin receptor TIR domain 68 220 IPR035897 -
Viun5g02800 986 Gene3D - 245 408 IPR027417 -
Viun5g02800 986 Gene3D Ribonuclease Inhibitor 602 782 IPR032675 -
Viun5g02800 986 Gene3D Ribonuclease Inhibitor 783 930 IPR032675 -
Viun5g02800 986 Gene3D - 412 497 IPR042197 -
Viun5g02800 986 FunFam Disease resistance protein (TIR-NBS-LRR class) 74 244 - -
Viun5g02800 986 Pfam NB-ARC domain 271 485 IPR002182 GO:0043531
Viun5g02800 986 ProSiteProfiles TIR domain profile. 76 242 IPR000157 GO:0007165
Viun5g02800 986 SMART till_3 77 217 IPR000157 GO:0007165
Viun5g02800 986 SUPERFAMILY L domain-like 608 924 - -
Viun5g02800 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 507 IPR027417 -
Viun5g02800 986 SUPERFAMILY "Winged helix" DNA-binding domain 483 588 IPR036390 -
Viun5g02800 986 PRINTS Disease resistance protein signature 448 462 - -
Viun5g02800 986 PRINTS Disease resistance protein signature 278 293 - -
Viun5g02800 986 PRINTS Disease resistance protein signature 354 368 - -
Viun5g02800 986 PRINTS Disease resistance protein signature 706 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02800 Viun-Chr5 39538712 39545054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02800 756 923 WRKY Transcription Factor Family AT4G12020 34.911 9.50e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02800 - - var:108332841 1576.22