Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02798 ATGGACATTTCTATGCACATATTAAATTGTTCATGGACATTTCTACAGAGAATGTGCAGAGTGTACCTAATCAACACCACTACCATGATGATGATGATGACAGACAAATTAGGGTTTAGAAGGTTTTGGGGCGGGTTGGGTCTTCCATCATCCTCTTCCAATGTTATCTCATCAGAATCTGCTTCTTCTTCCGATCATTCCTCGGGCACCATCCAAAACCAAGACTACAGGTACGATGTGTTCATCAGTTTCAGAGGTTCTGACACCCGCAACTCTTTCGTTGATCATCTCTACTCTCATCTTCTCCGGAAGGGTATTTTTGTCTTTAAAGACGACCACAAGCTCCGCAAAGGAGAATCCATTTCATCACAGCTTCTACAAGCAATCAGAGGTTCTCGAATTTCTATCATCGTCTTCTCCAAAGATTATCCTTCCTCCTCGTGGTGTTTGGACGAAATGGCCACTATAGCTGATTGCAAACAGCAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTGATCCATCTATCGTTAGACATCAGAGGGGGGCGTATAAGATTGATTTCCTTGTACACAGATTGAAATTAAGAAATGAGCCAAACAAGGTCCTTCGATGGGAGAAAGCTATGACGGATTTGGCCAACTCAACTGGTTGGGATGTCAGATACAAGCCAGAATTTCGGGAAATTGAAAAAATTGTTCAAGCGGTAATAGAAACACTGGGTCATAAATTCTCTGGGTTTGTTGATGATCTTATTGGGATACAACCACGCGTACAAGCATTAGAAGATAAATTAAGGTTAAGTTCAAAAAGTGATGATGTTCAAGTTTTAGGGATTTGGGGAATGGGTGGAATAGGAAAGACGACTCATGCAGTTGTGCTATATGACAAAATGTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGGGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTGGATGAAAAATGTCTAGATACATACAGTCCTATTGAAATATCAGGGATTGTAAGAAATCGGCTACATAAGATAAAGGTTCTAATAGTTCTTGACAATGTTGATGAATTAGAGCAATTGCAGGAACTGGCAATAAATTCTAAATTGCTTTTCAGAGGAAGTAGAATGGTTATAATCAGTAGGGATGAGCATATCCTAAAAGTTTATGGAGCTCATGTAATACACGAGGTTTCATTAATGAATGATAAAGATGCTCGTGAATTGTTTTATACAAAAGCGTTCGAAAGTGAAGAGCAAAACAGTAGTAGCTGTGTGGAGTTGATTCCTGAGGTACTCAAATATGCCCAATGTCTTCCATTAGCAGTTAGAGTGATAGGGTCTTTCTTGTGTAGAAGAGATTCTAGTGAATGGAGAGATACTTTGGATAGATTTGAGAACAATCCAGATAATAAAATCATGGATGTACTTCAAATAAGTTTTGATGGGCTACACTATACGGAAAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGAAGAGAGGGAGGATTATGTTAAGCGAATTCTGGAGTGTTGTGGATTACACCCTCATATTGGAATTCAAAGAATGATTGAGAAATCTCTCATAACAATTAGGGATCAACAAATTCATATGCATGATATGTTGCAAGAATTGGGGAAGAAGATTGTTCGCAACCAATGTCCAGAAGAACCAGAATCATGGAGTAGAATATGGCTTTATGAAGATTTCTTTCATGTGTTGACGACCCAAACGGGAACAAATGATGTTAAAGCCATAGTTCTAAATGAAAAGGAAGCTATTTCAGAATGTAGCATCGACGGATTGTCAAAAATGAAGAACCTTAAATTACTCATATTATATCATAAAAGGTTTTCCGGAAGCCTTAATTTTCTTTCTCAGAAGCTGCGATATTTCTTGTGGCATGATTATCCTTTTGCTTCTTTGCCATCAAGTTTTGCAGCCTCTGGCCTTGTGGAATTGAACATGCCTAATAGTAGCATCAACTGCTTATGGGAAGGCCGCAAGGATTTCCCATGTCTGAAAAGAATGGATTTGAGTAACTCAAAATATCTTACGGAGACTCCTGATTTTACTGGGGTCCCAAATCTTGAGCGTCTGGATCTTTCAGGATGCACAGATTTATCGTTTGTGCACCCTTCAATTGGGCTTCTTCAACAGCTTGCTTTCTTGAGTTTAAGAAATTGTACTAATCTAATCAGCTTCAAATTAGGCAACGGATTTAATCTAAGTTCTTTGAGAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACACGCCAGATTTTACAGGGACAACAATTCTTGAGTACCTTGACTTCGATGGATGTACAAGTTTATCCTCGGTTCATGAATCTATTGGAGTCCTTGCAAAGCTTACATTCTTGAGCTTGAGAGACTGCACAAGCCTTGCTAGTATACCTAGCAACAATAATATCATGAAATCTCTTCAGACTCTAGATTTCTCTGGCTGTTTTCAACTTACTGATTTGTCCTTACGGTTTTTCATTTCTTTATCCATGACCTCTTTAATTCTTTTGGACATAGGCTTCTGCAATCTACTTGAAGTACCTAATGCTATTGGAGACTTGTTGTGTTTAGAAAGACTGAATCTGCAGGGAAACAATTTTGTTGCTATACCACCTTCCATTAGCAGGCTTAAGAGTCTAGCGTATTTAAACGTGTCCCATTGCCATACGCTTCAATATTTGCCTAACCTTTCAAAAATAAGTACTTCATCAACTGGAAGGTACTTCAAAACGGTATCTGGATCTCGTGATCACAGGTCAGGCCTATATCTTTTCGATTGTACCATGATAACCAATTATTTCTATCCGAAGGCCCGATTCAAAGACCTAGAACTTGCATGGCTTGTAAGACTAGCTAAGAATCCATGTTCTTTTCGGTGTGGCTTTGACATTGTTGTTCCTTGGGGTTTGGAATTTCCAAGGTCTTCTTCACATCCGTTTTATCTATCTTTTGAAAGTGAAGACACAGAAGAATACTTCGACATGCCACTGAATTTGGAGCGGGACAAAGTGGTGGATAGTTCAAAGCATCTTTGGATTATTTACATCTCTCGAGAACACTGTCACTTTGTGAAAACAGGATCACATATCTCATTTAAAGCGCATCCAAGTGTTAAGATAAACGCATGGGGGATGAGGAGTATATTCCGGGAAGATGTAATTTATTCTGAATTGATGCTTGAAGAACCTCGCCATGTGAAGTTTGATTTTGTAGAAAAAAGCAGCACCAACTCTGGTCCCAAATTCCAGCTTCCTTACAATTGGTTGGTCACAAATGAAGACGAAGTTGAGAATATTGATGCAAAGGCAAAAGAAAACAATTTGTCATATGCAGGACTTTGA 3414 0.3843 MDISMHILNCSWTFLQRMCRVYLINTTTMMMMMTDKLGFRRFWGGLGLPSSSSNVISSESASSSDHSSGTIQNQDYRYDVFISFRGSDTRNSFVDHLYSHLLRKGIFVFKDDHKLRKGESISSQLLQAIRGSRISIIVFSKDYPSSSWCLDEMATIADCKQQSNQTVFPVFYDVDPSIVRHQRGAYKIDFLVHRLKLRNEPNKVLRWEKAMTDLANSTGWDVRYKPEFREIEKIVQAVIETLGHKFSGFVDDLIGIQPRVQALEDKLRLSSKSDDVQVLGIWGMGGIGKTTHAVVLYDKMSHRFDASCFIEDVSKLYRDGGHTAVQKQIIHQTLDEKCLDTYSPIEISGIVRNRLHKIKVLIVLDNVDELEQLQELAINSKLLFRGSRMVIISRDEHILKVYGAHVIHEVSLMNDKDARELFYTKAFESEEQNSSSCVELIPEVLKYAQCLPLAVRVIGSFLCRRDSSEWRDTLDRFENNPDNKIMDVLQISFDGLHYTEKEIFLHIACFFKEEREDYVKRILECCGLHPHIGIQRMIEKSLITIRDQQIHMHDMLQELGKKIVRNQCPEEPESWSRIWLYEDFFHVLTTQTGTNDVKAIVLNEKEAISECSIDGLSKMKNLKLLILYHKRFSGSLNFLSQKLRYFLWHDYPFASLPSSFAASGLVELNMPNSSINCLWEGRKDFPCLKRMDLSNSKYLTETPDFTGVPNLERLDLSGCTDLSFVHPSIGLLQQLAFLSLRNCTNLISFKLGNGFNLSSLRVLHFSGCTKLENTPDFTGTTILEYLDFDGCTSLSSVHESIGVLAKLTFLSLRDCTSLASIPSNNNIMKSLQTLDFSGCFQLTDLSLRFFISLSMTSLILLDIGFCNLLEVPNAIGDLLCLERLNLQGNNFVAIPPSISRLKSLAYLNVSHCHTLQYLPNLSKISTSSTGRYFKTVSGSRDHRSGLYLFDCTMITNYFYPKARFKDLELAWLVRLAKNPCSFRCGFDIVVPWGLEFPRSSSHPFYLSFESEDTEEYFDMPLNLERDKVVDSSKHLWIIYISREHCHFVKTGSHISFKAHPSVKINAWGMRSIFREDVIYSELMLEEPRHVKFDFVEKSSTNSGPKFQLPYNWLVTNEDEVENIDAKAKENNLSYAGL 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02798 1137 Gene3D - 246 408 IPR027417 -
Viun5g02798 1137 SMART LRR_CC_2 708 730 IPR006553 -
Viun5g02798 1137 SMART LRR_CC_2 901 921 IPR006553 -
Viun5g02798 1137 SMART LRR_CC_2 828 853 IPR006553 -
Viun5g02798 1137 FunFam Disease resistance protein (TIR-NBS-LRR class) 74 244 - -
Viun5g02798 1137 SUPERFAMILY Toll/Interleukin receptor TIR domain 68 220 IPR035897 -
Viun5g02798 1137 ProSiteProfiles TIR domain profile. 76 242 IPR000157 GO:0007165
Viun5g02798 1137 SUPERFAMILY "Winged helix" DNA-binding domain 483 588 IPR036390 -
Viun5g02798 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 507 IPR027417 -
Viun5g02798 1137 SMART till_3 77 217 IPR000157 GO:0007165
Viun5g02798 1137 Pfam TIR domain 78 245 IPR000157 GO:0007165
Viun5g02798 1137 PRINTS Disease resistance protein signature 448 462 - -
Viun5g02798 1137 PRINTS Disease resistance protein signature 354 368 - -
Viun5g02798 1137 PRINTS Disease resistance protein signature 278 293 - -
Viun5g02798 1137 PRINTS Disease resistance protein signature 706 722 - -
Viun5g02798 1137 Gene3D - 412 497 IPR042197 -
Viun5g02798 1137 Gene3D Ribonuclease Inhibitor 755 848 IPR032675 -
Viun5g02798 1137 SUPERFAMILY L domain-like 608 919 - -
Viun5g02798 1137 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 78 771 IPR044974 GO:0006952
Viun5g02798 1137 Gene3D Ribonuclease Inhibitor 586 753 IPR032675 -
Viun5g02798 1137 Gene3D - 75 245 IPR035897 -
Viun5g02798 1137 Pfam NB-ARC domain 271 485 IPR002182 GO:0043531
Viun5g02798 1137 Gene3D Ribonuclease Inhibitor 849 939 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02798 Viun-Chr5 39538564 39545054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02798 756 923 WRKY Transcription Factor Family AT4G12020 34.911 1.16e-15 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02798 - - var:108332841 1848.56