Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02756 ATGGACTCACAACAGGTTTTCAGTTTTGGTGTTGCAAGTGCAGGATTACCTTACATACCATCTTTTCCCACTGTTCCATCCCTACCTAACAGGCTACTTGGATCCTTGAAATATGACACTGGAAACTCACCCAATTCACCCTTTTCCACTTATTTTGATTCTGACACTATTTCTGCATTGAGTGACAGCCAGGAGCAATACAGCCCCGGAGAAATCCTCTCTGGTGTCAGCTCCTCTTGTAACTCTTCACTGGAAGCCAACCAATATATGTATAAATCAATCTCTTCTGTGGATTTCATAGACAATTTCCCTCTATACTCTGCCTGGAACAACTCTCTTCCACAGAATGTGAATAGTAATCAGAAAATCCAACACGCTTTGCTAGAGCTAGAAACTGCTCTGATGGCCCCTGATGATGATCAAGTTACCACACCAAATACATTGGCTGAGAGCAGCAGACCAATGGCATCTGGCCACAGATACAGGTCCTGGAGGCATGAGAACGATGGAGCACAATATGCTCAGCCATCATATGCTCCCAGCAGTAGGCTGTCAAGTGAAGTTGTGCATGTAGAGAAACGCCAAAAGTTGATGGAGGAACCATCACTACAAGCTTTCCCACCAAACGATTTGAAGCAACTGCTGATTGCATGTGCCAAAACCCTTCATGAAAACAACCTCAAAGATTTTGATCAGTTGGTAGGAAAGGCTAGAGATGCTGTGTCCATCAATGGGGAGCCGATCCAGCGGCTTGGCGCTTACATGGTAGAAGGGCTTGTTGCAAGAAAGGAAGCGTCTGGGAAGAGCATCTATCATGCCCTTAGGTGCAGAGAGCCTGAAGGTGAAGAATTACTCTCTTACATGCAACTTCTGTTTGAGATTTGCCCCTACTTGAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCGGAAGCCTGCAGAAACGAGGATCGCATACACATCATAGACTTCCAAATCGCTCAAGGATCTCAATGGATGACACTTCTTCAAGCCCTTGCAGCAAGACCAGGTGGTGCTCCACATGTTCGGATCACGGGGATTGATGATCCTGTTTCCAAATATGCACGTGGCGGCGACGGATTGGACATTGTTGGTAAAAGGTTGTCCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTGCCTGTTTTTGGTCCAGAAGTGACAAGGGAAATGCTAGATATTAGACCTGGAGAGGCTTTAGCAGTGAACTTTCCCTTGCAGCTTCATCACACAGCTGATGAGAGTGTTCATGTGAGTAATCCAAGGGATGGATTATTGAGATTGGTGAAGTCACTTTCTCCGAAGGTGACCACACTAGTGGAGCAGGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTATCGAAACCTTGGATTACTACTTGGCAATCTTCGAGTCCATTGATGCTAGTCTCCTCCCAAGAGATAGCAAGGAAAGGATCAATGTGGAGCAACATTGTCTGGCCAGGGATATAGTGAATATCATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTATTGGGCAAGTGGAAATCCAGGTTAACAATGGCTGGATTCACTCAATCTCCTTTGAGCTCTTATGTGAATTCTGTCATAAGAATCCTTCTGAAATGTTATTCAGAACATTATACTCTGTTGGAGAAGGATGGAGCCATGTTGTTGGGGTGGAAGGATAGAAATTTGATATCAGCTTCAGCCTGGCATTGTTGA 1755 0.4501 MDSQQVFSFGVASAGLPYIPSFPTVPSLPNRLLGSLKYDTGNSPNSPFSTYFDSDTISALSDSQEQYSPGEILSGVSSSCNSSLEANQYMYKSISSVDFIDNFPLYSAWNNSLPQNVNSNQKIQHALLELETALMAPDDDQVTTPNTLAESSRPMASGHRYRSWRHENDGAQYAQPSYAPSSRLSSEVVHVEKRQKLMEEPSLQAFPPNDLKQLLIACAKTLHENNLKDFDQLVGKARDAVSINGEPIQRLGAYMVEGLVARKEASGKSIYHALRCREPEGEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGGDGLDIVGKRLSLMSEKFGIPVEFHGVPVFGPEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDASLLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFTQSPLSSYVNSVIRILLKCYSEHYTLLEKDGAMLLGWKDRNLISASAWHC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02756 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 166 579 IPR005202 -
Viun5g02756 584 Pfam GRAS domain family 211 582 IPR005202 -
Viun5g02756 584 ProSiteProfiles GRAS family profile. 202 583 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02756 Viun-Chr5 39111624 39115016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02756 202 582 GRAS Transcription Factor Family AT1G50600 62.205 7.17e-171 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g02756 GRAS 4.5e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02756 - - gmx:100799073 979.548