Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02743 ATGGGAACAAAGGCAAAGAAAGCTATGAAGAACATGAAAAAGGCTTCCTCTAACAAGCCATCTCAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCAGCTCGCAAGCTCGCAGAACAGAAGCCACCGGAAAATACGGCCACAGTATTGTATATATCCAGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGCGGTTGAGAGTTGCGAGAAATAAAAAGACAGGAAAATCGAGACATTTTGGGTATATAGAATTTGAATCTCCTGAGGTAGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAGCACCTTCTCCAAGTTCATGTTGTACCTCCGGAGCATGTTCATTCAAGATTGTGGAAAGGATTCAGTTATCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGTAAGAACCTTAGAAGAGCACAAAAAATTGGTGGAGAGGATTGTAAGACATGACCAAAAACGGCGGAAAAGGATAGAGGCTGCTGGCATTGATTACGAATGCCCTGAGATTATGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGATGACTGA 627 0.4242 MGTKAKKAMKNMKKASSNKPSQGADFLPLEGGPARKLAEQKPPENTATVLYISRIPHGFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPEHVHSRLWKGFSYRHKPLDYVQIERKRHDKVRTLEEHKKLVERIVRHDQKRRKRIEAAGIDYECPEIMGNIQPAPKKIKFDD 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02743 208 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 207 - -
Viun5g02743 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 117 IPR000504 GO:0003723
Viun5g02743 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Viun5g02743 208 CDD RRM_NIFK_like 49 122 - -
Viun5g02743 208 SUPERFAMILY RNA-binding domain, RBD 18 134 IPR035979 GO:0003676
Viun5g02743 208 SMART rrm1_1 49 122 IPR000504 GO:0003723
Viun5g02743 208 Gene3D - 3 123 IPR012677 -
Viun5g02743 208 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02743 Viun-Chr5 38981472 38985952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02743 48 121 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 2.94e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02743 K14838 - gmx:100814276 362.844