Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02740 ATGGCAGATGATCAATTTCAGGCAAGTGGAAACTGGTGGGACACAGCAAGAAACGTGAGGTATGAAAGCGGAGCGTCACAGTCATCTTCCTCTGCCATCACCAACATAAACAACTTTGCTTGGCAAGCTTCAGATATGGCGGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAACCCCCAGATTCTACAACTTCCACTGACCCCAACTTGCATATGATGGGTCTGGGCCTGTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTACGAGGGGAGAAGGGTACAGAGAATAGTTTCAGATCGATGTTGCAAGAGAACTTGAGCTCATCAAGAACAAATTTTCAGCAAGAGACTGGGGTGGAGTTGTCTCAGCAAGTTCAGTGGAGGTCAGAGAAGATGTTCTCTGCAGAATCTTCAAGCAATGAGTTCAAGCAAGTGAATAGGGGTTTCTCGTTGGATCAAAGCAAGTTTAGTCCACAATATAGTTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATGGATTCCTCAGCCTTATATGGGACCCCTTCAATATTGCAAGGACTATTGGGACCTGATCACAATAACCAACAACAACCTTCTTCCTTTGAGAACCGCTCCATGAGTTTCCCATACCCAACAACATATGGATTAAACTCTAATAATGAGTTAATCCCTTCCTGGTCCAAAGTTCCTCAATTTTTGAGAGGTTCACCTCCAAAACAACCACCCAATAACCAGCTCCATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTGCAAACTTCAAAGATGTTCGCTCCAGCTTCTTCCCTTCATTGCAACCCCCCTTCTCTACGCCAAATTTTGAAGTACAGTCAAAGAATATATCTGAAGTTAGGGAGTCTGGTAATGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCCTTAAGTACACCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATGTAAGGAAACTGAGGGACCAAAGCAGGATCTAAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCGAGCACATTCCCAGTAACTCATGAAACCACAGTGGATTTTTGGACACCAACATTCGGAGGAGCTTCGAGATAG 1368 0.451 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNINNFAWQASDMADMKPRSSMDSSSVVFHDSQNKLQPPDSTTSTDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETGVELSQQVQWRSEKMFSAESSSNEFKQVNRGFSLDQSKFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGTPSILQGLLGPDHNNQQQPSSFENRSMSFPYPTTYGLNSNNELIPSWSKVPQFLRGSPPKQPPNNQLHFTNNAPFWNASEAANFKDVRSSFFPSLQPPFSTPNFEVQSKNISEVRESGNVGKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQNSGKCKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGASR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02740 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 400 IPR036638 GO:0046983
Viun5g02740 455 MobiDBLite consensus disorder prediction 49 80 - -
Viun5g02740 455 Gene3D - 345 403 IPR036638 GO:0046983
Viun5g02740 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Viun5g02740 455 CDD bHLH_AtbHLH_like 341 392 IPR045239 -
Viun5g02740 455 MobiDBLite consensus disorder prediction 51 80 - -
Viun5g02740 455 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 123 436 - -
Viun5g02740 455 FunFam Transcription factor bHLH123 family 345 407 - -
Viun5g02740 455 SMART finulus 346 390 IPR011598 GO:0046983
Viun5g02740 455 MobiDBLite consensus disorder prediction 313 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02740 Viun-Chr5 38867890 38872199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02740 103 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.959 6.41e-80 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02740 - - gmx:100778697 785.023