Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02734 ATGTCTTTAATGAGGATCATTTTTCTGTGTTATCATATACTTCTCTGTCTTTGTGAAATTTCCTTGGCACTTGATTCCATTTCTCAAGACCTGTCCCTAAGGGACGATGTTGATAACACCACCTTGGTTTCGAAAGATGGAACCTTTGAACTTGGATTCTTCACCCCAGGGAATTCCCAGAAACGTTACCTGGGGATTTGGTACAGGAAAATCCCTATTCAAACTGTGGTTTGGGTTGCAAACAGCCTCAATCCAATCAATGATTCATCTGGGATCTTGAGAATGAACACCAGCAGTGGGAACCTTGTCCTCACACAGAAGGGCAAAGTTGTTTGGACTACAAACTCTTCGAGAAAAGCAGAAAGCCCAGTAGCCCTTCTCTTAGATTCTGGCAATCTTGTGATGAGAGATGAGAAAGATGCAAACGTTGAGGCCTACTTGTGGCAGAGCTTTGACTACCCTACTGATACCTTCTTACCAGAAATGAAGTTTGGTTGGGACTTGAGAACTGGTATCAATAGGAAGATAACAGCATGGAAGAGCCCTGATGATCCATCTCCCAGTGACTTCTCTTTCGGTATGGTGCTCAACAACTATCCTGAAGCATACATGATGAAGGGTAACCAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACATGTTAAGGCCAACCCCATTTATGACTTCAGGTTTGTTTTCAACGAAGCTGAAGTTTACTACACATATAGCCTTAAGAACACCTCTGTGATTTCAAGGTTGGTGCTGAATGCAACAAGCTATGTTCGTAGACGGTATGTGTGGGTTGAATCAAAGCAAATATGGGAGGTCTACACTTCAGTGCCACTGGACTTATGTGACAGTTATTCCCTTTGTGGAGCTAATGCAAATTGTGTTATATCAGATTCACCTGTGTGCCAATGTTTGAAAGGGTTCAAGCCTAGGTCCCCTCAAGCATGGAACTCAATGGATTGGTCTCATGGATGTGTCCGCAATAAGGAATTAAGCTGTGAGAACAAGCACAAGGATGGATTTATCAAACTTCCTGAGATGAAAACGCCTGACACTACACATAGTTGGCTAGATCAGACAATTGGGCTAGAGGAATGCAGAGCCATGTGCTTGGATAACTGTTCATGTATGGCTTATGCAAATTCAGATATCAGTGGACAAGGAAGTGGTTGTGCCATGTGGTTTGGTGATCTCATTGATATGAGACAGTTTTCAGATGGAGGCCAGGAAGTATATGTTCGAGTGGATGCTTCAGAATTAGAACACACCAGTAAGGGCCACAAGAAGGGAAGAGTCCTGGCTGCAGTGACAGTTTCTTTTGCCGTGGCAACAGTTTCTGGTATTCTAATAATACTTGGCTTGTGTTATAGAAAGAAATCACGCCCCAATGTGAAAGAGAGATCGGACTTCAGTATCAAATCATATCAAAACAGTGCAATGGAAGTGGGTGATATGGACCTACCAGTTTTTGACTTGTCAACTATAGCCAAAGCCACTAACAAATTTACACTCAAGAACAAAATCGGAGAAGGTGGTTTTGGATCTGTATACAGGGGAACACTAGCAGATGGTCTGGAAATTGCTGTGAAGAGGCTTTCAGAAAGTTCAGGACAAGGATTGACTGAATTCAAGAACGAAGTAAAATTGATTGCAAAACTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTGTATGAGTACATGATAAATGGTAGCCTGAACTCATTTATCTTTGATCAGGAAAAGAGTGAGTTACTAGACTGGTCAAAGCGTTTCAACATTATATGTGGGATTACTAAGGGCCTTCTCTACCTTCATCATGATTCTAGGCTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAATGAGTTGAACCCCAAAATTTCAGATTTTGGCATGGCTAGAATATTTGGTGGAGATCAGAAAGAAGGAAACACCAGAAGAATTGTTGGTACTTATGGCTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTATTGATGGAGATTATATCTGGGAAGAGAAGCAGAGGGTATTATAATCAGAACCACAGCCAAAATCTCATAGGCCATGCATGGGAACTCTGGAAAAAAGGAAGACCACTAGAACTGGTTGATAAAAGCCTAGAAAACTCCAATTTTCAATCACAGATATTGCATTGCCTTCATGTTAGTCTCTTGTGTGTTCAACAGAATCCAGATGATAGGCCTGGAATGTCTAGTGTGCTCTTAATGTTAGTGAGTGAGGTTGAATTGCCTGAGCCAAAGCAACCAGGATTCTTTGGAAAATATTCAGGTGAAGGAGACTCCTCTACAAGTAAGCAGCAACAAAGTTCAACAAACGAAATAACCATTACCTTATTAGAAGCTCGTTGA 2487 0.4129 MSLMRIIFLCYHILLCLCEISLALDSISQDLSLRDDVDNTTLVSKDGTFELGFFTPGNSQKRYLGIWYRKIPIQTVVWVANSLNPINDSSGILRMNTSSGNLVLTQKGKVVWTTNSSRKAESPVALLLDSGNLVMRDEKDANVEAYLWQSFDYPTDTFLPEMKFGWDLRTGINRKITAWKSPDDPSPSDFSFGMVLNNYPEAYMMKGNQKFYRSGPWNGLHSSGSPHVKANPIYDFRFVFNEAEVYYTYSLKNTSVISRLVLNATSYVRRRYVWVESKQIWEVYTSVPLDLCDSYSLCGANANCVISDSPVCQCLKGFKPRSPQAWNSMDWSHGCVRNKELSCENKHKDGFIKLPEMKTPDTTHSWLDQTIGLEECRAMCLDNCSCMAYANSDISGQGSGCAMWFGDLIDMRQFSDGGQEVYVRVDASELEHTSKGHKKGRVLAAVTVSFAVATVSGILIILGLCYRKKSRPNVKERSDFSIKSYQNSAMEVGDMDLPVFDLSTIAKATNKFTLKNKIGEGGFGSVYRGTLADGLEIAVKRLSESSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMINGSLNSFIFDQEKSELLDWSKRFNIICGITKGLLYLHHDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTRRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNHSQNLIGHAWELWKKGRPLELVDKSLENSNFQSQILHCLHVSLLCVQQNPDDRPGMSSVLLMLVSEVELPEPKQPGFFGKYSGEGDSSTSKQQQSSTNEITITLLEAR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02734 828 SMART serkin_6 512 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02734 828 SMART blect_4 33 154 IPR001480 -
Viun5g02734 828 SUPERFAMILY Protein kinase-like (PK-like) 492 783 IPR011009 -
Viun5g02734 828 Gene3D Phosphorylase Kinase; domain 1 473 587 - -
Viun5g02734 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Viun5g02734 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 425 - -
Viun5g02734 828 CDD STKc_IRAK 518 783 - -
Viun5g02734 828 ProSiteProfiles Protein kinase domain profile. 512 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02734 828 SMART ntp_6 346 425 IPR003609 -
Viun5g02734 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Viun5g02734 828 Pfam PAN-like domain 343 411 IPR003609 -
Viun5g02734 828 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Viun5g02734 828 CDD PAN_AP_plant 341 425 - -
Viun5g02734 828 Pfam Protein tyrosine and serine/threonine kinase 513 780 IPR001245 GO:0004672|GO:0006468
Viun5g02734 828 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Viun5g02734 828 Gene3D Transferase(Phosphotransferase) domain 1 588 791 - -
Viun5g02734 828 Pfam Domain of unknown function (DUF3403) 786 828 IPR021820 GO:0004674
Viun5g02734 828 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Viun5g02734 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Viun5g02734 828 MobiDBLite consensus disorder prediction 803 828 - -
Viun5g02734 828 ProSiteProfiles PAN/Apple domain profile. 343 427 IPR003609 -
Viun5g02734 828 Gene3D - 24 151 IPR036426 -
Viun5g02734 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 587 - -
Viun5g02734 828 MobiDBLite consensus disorder prediction 794 828 - -
Viun5g02734 828 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Viun5g02734 828 Pfam D-mannose binding lectin 75 180 IPR001480 -
Viun5g02734 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 791 - -
Viun5g02734 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Viun5g02734 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 773 - -
Viun5g02734 828 CDD B_lectin 38 154 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02734 Viun-Chr5 38851628 38855620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02734 427 800 Receptor kinase-like Gene Family AT4G23190 51.436 4.02e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02734 PK_Tyr_Ser-Thr 8.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02734 - - gmx:100778155 1440.25