Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02725 ATGGATTGCTATGAGGTGATAGTGTGGTGCTCTCTCTTACTTTCTTCCTTCATACCTAACATCACTGCACTGAGCAGTATCACTCCAAATAAGCCATTGCATCACAATGAATCCCTTGTTTCAGCATCTGGAACCTTTGAAGCAGGGTTCTTTAGCATTGGAAGTTCTCGGAGATATTACTTCTGCATATGTTACAAGAATATATCACCTAGAACAATTGTTTGGGTGGCCAACAGAAACACCCCATTGGATAACTCCACAGGGGTTTTGAAAGTCAGTCATGGGGGAAATCTTGCTGTACTTGATGGCACTGGTGCAAATTTTTGGTCATCCAATGCATCAACCACTGCTCAGAAGCCAACAGTGGAGCTTTTGAACTCTGGCAACCTTGTTGTGAAAGATGGTGGTGGTAGTAATGCCCCAGAAAAGATTGTGTGGCAAAGCTTTGATTATCCTGGTGACACTTTACTTCCTGGAATGAAACTCAGAAGCAGTTTAGTTACAGGTGCACATAGTTCTCTGACATCATGGAGGAACACAGAAGATCCTGCTGTGGGGGAATTTTCATTGTATATTGATCCTCATGGTTTTCCTCAGAGAGTGACTACAAAGGGAGGGACTTGGTTGTACAGAGCAGGTTCGTGGAATGGTTATCAGTTTTCAGGAGTTCCTTGGAAACTGTTGCCTAATTTCTTCAATTACTATTTTGTGTTAACCAAGGAGGAAGTGTATTATGAGTATGAACTCTTGGAACGTTCTGTTGTTACAAGGTTTGTGATCAACCAAGCAGGTAGCGATCAACGTTTCACATGGTCAAAGAGGACAAAAAGTTGGGAGCTTTTTGCCTCTGGCCCAAGGGAACAGTGTGAAAACTATGCTTTGTGTGGTGTAAATTCTGTTTGCAATGTTAATCGCTACCCTATATGTGAATGCTTGGAGGGTTTTGTCCCTAAGTTCACAGAAAAGTGGAGATCATTGGATTGGTCTAGTGGGTGTGTTCGGAGAATGAGTCTGAGTTGTGACAATGAAGATGGTTTTGTTAAGTACGAGGGAATGAGATTACCAGACACATCTTCCTCCTGGTATGACGCAAGAATGAGTCTTGATGAATGTGAGAGAGTGTGCTTGCAAAACTGTTCTTGCACAGCATACACAAACTTAGATGTCAGAGGTGGTGGCAGTGGTTGTCTACTTTGGTTTGGTAACATTGTGGATATGGGAAAACATCTCTCCCAAGGACAAGAGATTTACATACGAATGGCTGCTTCAGATATAGAAAACACTTGGCATAAAAGGCACATTAACAAGAAGCTTGTGGTGGTTTTGGCAGCAATTGTTGCGTTCATTATAGTCATAACATTAGGATCAGTTCTATACATTCGGAGAAAACTTGAGAAACAAGGAAAGACAAATATAGTGGACCAGATGCCTCACACTATAAAACATGGGAAGAAAGACATTGACTTACCAACCCTTGATTTATCAACCATTGATAATGCCACTCGTAGTTTCTCTGTCAATAACATATTGGGAGAAGGTGGATATGGACCAGTTTACAAGGGTGTGCTGGCAAATGGACAAGAAATAGCTGTTAAGAGACTTTCCAAAAATTCTGGACAAGGATTAGATGAATTCAGAAATGAAGTTGTGTTGATTGCGAATCTTCAGCACCGGAATCTTGTAAAGATTCTAGGGTGTTGTGTTCAAGAGGAGGAGAGAATCTTGATCTATGAATTCATGCCTAACAGGAGCTTGGATCTTTACATTTTTGATAACACAAGAAAGAGATTATTGGATTGGAGCAAACGCTTTCAAATTATAAGTGGCATAGCTAAAGGTCTTCTCTATCTTCATCATGATTCTAGACTGAGGATCATTCACAGAGATATCAAAGCAAGCAATATTCTTCTTGATAATAATATGAATCCAAAGATATCAGACTTTGGACTAGCAAGAATGCTTGTTGGTGATCACACTAAAGCCAATACAAAAAGGGTTGTGGGAACTCATGGTTACATGCCTCCTGAATATGCAGTGTATGGATATTTTTCAGTAAAATCAGATGTGTTCAGCTTTGGTGTTATTGTGCTAGAGATAGTTAGTGGGAGGAAGAACACAAGATTTCTTGATCCACTCAACCAACTTAACCTTATAGGGCATGCTTGGAGATTGTGGAGTGAAGGGAGGCCTTTGGAGCTGGTTGATGAAGCACTAGGGGATTCAGTGATTGAAAGTGAAGTGTTGAAAATTGTTCATGTTGGGCTCTTGTGTGTTCAAGAGAGAGCAGAGGATAGGCCCAACATCTCAAGTGTGGTTCTGATGCTGAATGGTGAGAGGCCATTGCCCAGGCCCAAGCAGCCTGCATTTTATCCACACCATGAAGATTTTTCTTCATCCACCAAGTGTGAATTCAGCTCAAATGATATGTCCATCAGTTTAGAGGCAAGATAG 2451 0.4109 MDCYEVIVWCSLLLSSFIPNITALSSITPNKPLHHNESLVSASGTFEAGFFSIGSSRRYYFCICYKNISPRTIVWVANRNTPLDNSTGVLKVSHGGNLAVLDGTGANFWSSNASTTAQKPTVELLNSGNLVVKDGGGSNAPEKIVWQSFDYPGDTLLPGMKLRSSLVTGAHSSLTSWRNTEDPAVGEFSLYIDPHGFPQRVTTKGGTWLYRAGSWNGYQFSGVPWKLLPNFFNYYFVLTKEEVYYEYELLERSVVTRFVINQAGSDQRFTWSKRTKSWELFASGPREQCENYALCGVNSVCNVNRYPICECLEGFVPKFTEKWRSLDWSSGCVRRMSLSCDNEDGFVKYEGMRLPDTSSSWYDARMSLDECERVCLQNCSCTAYTNLDVRGGGSGCLLWFGNIVDMGKHLSQGQEIYIRMAASDIENTWHKRHINKKLVVVLAAIVAFIIVITLGSVLYIRRKLEKQGKTNIVDQMPHTIKHGKKDIDLPTLDLSTIDNATRSFSVNNILGEGGYGPVYKGVLANGQEIAVKRLSKNSGQGLDEFRNEVVLIANLQHRNLVKILGCCVQEEERILIYEFMPNRSLDLYIFDNTRKRLLDWSKRFQIISGIAKGLLYLHHDSRLRIIHRDIKASNILLDNNMNPKISDFGLARMLVGDHTKANTKRVVGTHGYMPPEYAVYGYFSVKSDVFSFGVIVLEIVSGRKNTRFLDPLNQLNLIGHAWRLWSEGRPLELVDEALGDSVIESEVLKIVHVGLLCVQERAEDRPNISSVVLMLNGERPLPRPKQPAFYPHHEDFSSSTKCEFSSNDMSISLEAR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02725 816 Pfam PAN-like domain 340 406 IPR003609 -
Viun5g02725 816 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Viun5g02725 816 Pfam Protein tyrosine and serine/threonine kinase 506 771 IPR001245 GO:0004672|GO:0006468
Viun5g02725 816 MobiDBLite consensus disorder prediction 800 816 - -
Viun5g02725 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 782 - -
Viun5g02725 816 PIRSF SRK 2 816 IPR024171 GO:0004674
Viun5g02725 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 579 - -
Viun5g02725 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 766 - -
Viun5g02725 816 Gene3D - 21 149 IPR036426 -
Viun5g02725 816 ProSiteProfiles Protein kinase domain profile. 504 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02725 816 SMART serkin_6 504 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02725 816 SMART ntp_6 341 420 IPR003609 -
Viun5g02725 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Viun5g02725 816 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Viun5g02725 816 Gene3D Transferase(Phosphotransferase) domain 1 580 781 - -
Viun5g02725 816 CDD STKc_IRAK 510 777 - -
Viun5g02725 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Viun5g02725 816 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Viun5g02725 816 SUPERFAMILY Hairpin loop containing domain-like 342 410 - -
Viun5g02725 816 MobiDBLite consensus disorder prediction 794 816 - -
Viun5g02725 816 Pfam D-mannose binding lectin 72 178 IPR001480 -
Viun5g02725 816 SUPERFAMILY Protein kinase-like (PK-like) 491 794 IPR011009 -
Viun5g02725 816 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
Viun5g02725 816 CDD B_lectin 30 152 IPR001480 -
Viun5g02725 816 CDD PAN_AP_plant 338 421 - -
Viun5g02725 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
Viun5g02725 816 SMART blect_4 30 152 IPR001480 -
Viun5g02725 816 Gene3D Hepatocyte Growth Factor 337 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02725 Viun-Chr5 38786277 38789530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02725 438 792 Receptor kinase-like Gene Family AT4G23190 50.696 3.68e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02725 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02725 - - gmx:106794307 1416.75