Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02724 ATGGATTGCTATGAGGTGATAGTGTGGTGCTCTCTCTTACTTTCTTCCTTCATACCTAACATCACTGCACTGAGCAGTATCACTCCAAATAAGCCATTGCATCACAATGAATCCCTTGTTTCAGCATCTGGAACCTTTGAAGCAGGGTTCTTTAGCATTGGAAGTTCTCGGAGATATTACTTCTGCATATGTTACAAGAATATATCACCTAGAACAATTGTTTGGGTGGCCAACAGAAACACCCCATTGGATAACTCCACAGGGGTTTTGAAAGTCAGTCATGGGGGAAATCTTGCTGTACTTGATGGCACTGGTGCAAATTTTTGGTCATCCAATGCATCAACCACTGCTCAGAAGCCAACAGTGGAGCTTTTGAACTCTGGCAACCTTGTTGTGAAAGATGGTGGTGGTAGTAATGCCCCAGAAAAGATTGTGTGGCAAAGCTTTGATTATCCTGGTGACACTTTACTTCCTGGAATGAAACTCAGAAGCAGTTTAGTTACAGGTGCACATAGTTCTCTGACATCATGGAGGAACACAGAAGATCCTGCTGTGGGGGAATTTTCATTGTATATTGATCCTCATGGTTTTCCTCAGAGAGTGACTACAAAGGGAGGGACTTGGTTGTACAGAGCAGGTTCGTGGAATGGTTATCAGTTTTCAGGAGTTCCTTGGAAACTGTTGCCTAATTTCTTCAATTACTATTTTGTGTTAACCAAGGAGGAAGTGTATTATGAGTATGAACTCTTGGAACGTTCTGTTGTTACAAGGTTTGTGATCAACCAAGCAGGTAGCGATCAACGTTTCACATGGTCAAAGAGGACAAAAAGTTGGGAGCTTTTTGCCTCTGGCCCAAGGGAACAGTGTGAAAACTATGCTTTGTGTGGTGTAAATTCTGTTTGCAATGTTAATCGCTACCCTATATGTGAATGCTTGGAGGGTTTTGTCCCTAAGTTCACAGAAAAGTGGAGATCATTGGATTGGTCTAGTGGGTGTGTTCGGAGAATGAGTCTGAGTTGTGACAATGAAGATGGTTTTGTTAAGTACGAGGGAATGAGATTACCAGACACATCTTCCTCCTGGTATGACGCAAGAATGAGTCTTGATGAATGTGAGAGAGTGTGCTTGCAAAACTGTTCTTGCACAGCATACACAAACTTAGATGTCAGAGGTGGTGGCAGTGGTTGTCTACTTTGGTTTGGTAACATTGTGGATATGGGAAAACATCTCTCCCAAGGACAAGAGATTTACATACGAATGGCTGCTTCAGATATAGAAAACACTTGGCATAAAAGGCACATTAACAAGAAGCTTGTGGTGGTTTTGGCAGCAATTGTTGCGTTCATTATAGTCATAACATTAGGATCAGTTCTATACATTCGGAGAAAACTTGAGAAACAAGGAAAGACAAATATAGTGGACCAGATGCCTCACACTATAAAACATGGGAAGAAAGACATTGACTTACCAACCCTTGATTTATCAACCATTGATAATGCCACTCGTAGTTTCTCTGTCAATAACATATTGGGAGAAGGTGGATATGGACCAGTTTACAAGGGTGTGCTGGCAAATGGACAAGAAATAGCTGTTAAGAGACTTTCCAAAAATTCTGGACAAGGATTAGATGAATTCAGAAATGAAGTTGTGTTGATTGCGAATCTTCAGCACCGGAATCTTGTAAAGATTCTAGGGTGTTGTGTTCAAGAGGAGGAGAGAATCTTGATCTATGAATTCATGCCTAACAGGAGCTTGGATCTTTACATTTTTGATAACACAAGAAAGAGATTATTGGATTGGAGCAAACGCTTTCAAATTATAAGTGGCATAGCTAAAGGTCTTCTCTATCTTCATCATGATTCTAGACTGAGGATCATTCACAGAGATATCAAAGCAAGCAATATTCTTCTTGATAATAATATGAATCCAAAGATATCAGACTTTGGACTAGCAAGAATGCTTGTTGGTGATCACACTAAAGCCAATACAAAAAGGGTTGTGGGAACTCAGCTTGGAGATTGTGGAGTGAAGGGAGGCCTTTGGAGCTGGTTGATGAAGCACTAG 2064 0.4089 MDCYEVIVWCSLLLSSFIPNITALSSITPNKPLHHNESLVSASGTFEAGFFSIGSSRRYYFCICYKNISPRTIVWVANRNTPLDNSTGVLKVSHGGNLAVLDGTGANFWSSNASTTAQKPTVELLNSGNLVVKDGGGSNAPEKIVWQSFDYPGDTLLPGMKLRSSLVTGAHSSLTSWRNTEDPAVGEFSLYIDPHGFPQRVTTKGGTWLYRAGSWNGYQFSGVPWKLLPNFFNYYFVLTKEEVYYEYELLERSVVTRFVINQAGSDQRFTWSKRTKSWELFASGPREQCENYALCGVNSVCNVNRYPICECLEGFVPKFTEKWRSLDWSSGCVRRMSLSCDNEDGFVKYEGMRLPDTSSSWYDARMSLDECERVCLQNCSCTAYTNLDVRGGGSGCLLWFGNIVDMGKHLSQGQEIYIRMAASDIENTWHKRHINKKLVVVLAAIVAFIIVITLGSVLYIRRKLEKQGKTNIVDQMPHTIKHGKKDIDLPTLDLSTIDNATRSFSVNNILGEGGYGPVYKGVLANGQEIAVKRLSKNSGQGLDEFRNEVVLIANLQHRNLVKILGCCVQEEERILIYEFMPNRSLDLYIFDNTRKRLLDWSKRFQIISGIAKGLLYLHHDSRLRIIHRDIKASNILLDNNMNPKISDFGLARMLVGDHTKANTKRVVGTQLGDCGVKGGLWSWLMKH 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02724 687 Pfam PAN-like domain 340 406 IPR003609 -
Viun5g02724 687 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Viun5g02724 687 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 663 - -
Viun5g02724 687 SUPERFAMILY Hairpin loop containing domain-like 342 410 - -
Viun5g02724 687 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Viun5g02724 687 Gene3D Transferase(Phosphotransferase) domain 1 580 671 - -
Viun5g02724 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 580 671 - -
Viun5g02724 687 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Viun5g02724 687 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
Viun5g02724 687 Gene3D Hepatocyte Growth Factor 337 419 - -
Viun5g02724 687 SUPERFAMILY Protein kinase-like (PK-like) 489 669 IPR011009 -
Viun5g02724 687 Gene3D - 21 149 IPR036426 -
Viun5g02724 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 579 - -
Viun5g02724 687 Pfam Protein kinase domain 505 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02724 687 CDD B_lectin 30 152 IPR001480 -
Viun5g02724 687 CDD PAN_AP_plant 338 421 - -
Viun5g02724 687 SMART serkin_6 504 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02724 687 SMART blect_4 30 152 IPR001480 -
Viun5g02724 687 Pfam D-mannose binding lectin 72 178 IPR001480 -
Viun5g02724 687 ProSiteProfiles Protein kinase domain profile. 504 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02724 687 SMART ntp_6 341 420 IPR003609 -
Viun5g02724 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Viun5g02724 687 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Viun5g02724 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02724 Viun-Chr5 38786275 38789530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02724 438 669 Receptor kinase-like Gene Family AT4G23190 53.017 2.43e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02724 Pkinase 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02724 - - gmx:106794307 1147.88