Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02719 ATGGAGGGTCATCGGTTACGTGTTGGAGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGCGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGACGATTTTGTCAGTAAACTGTCAAGGCACAAATCAAAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTATGGAATCAACACTCAACTCAAAATCCAGTTCTGGCGGTTTGCAATCTCGTGTGGTCTAAAAATATCAACGAACTAGTAAGCACACATGGTTACTCCCAGATCCAGATAATTGTTTGGAGATACCCCACAATGTCAAAGCTGGCCACTCTTACTGGCCACACATACAGAGTTCTCTATCTTGCCATTTCTCCAGATGGACAGACTATTGTAACTAGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCATCCCCTAAATCACAGGTGGCTTTGAAGAAACACTCTGGCGTTATCCATGTGTTGTGTGTCCATAGTATATACAAAACAGCATCATAA 558 0.4265 MEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQDDFVSKLSRHKSKVCGLKWSYDNRELASGGNDNRLFVWNQHSTQNPVLAVCNLVWSKNINELVSTHGYSQIQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTRAGDETLRFWNVFPSPKSQVALKKHSGVIHVLCVHSIYKTAS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02719 185 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 155 IPR001680 GO:0005515
Viun5g02719 185 SUPERFAMILY WD40 repeat-like 2 176 IPR036322 GO:0005515
Viun5g02719 185 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 155 - -
Viun5g02719 185 Pfam WD domain, G-beta repeat 40 74 IPR001680 GO:0005515
Viun5g02719 185 Pfam WD domain, G-beta repeat 118 154 IPR001680 GO:0005515
Viun5g02719 185 SMART WD40_4 115 154 IPR001680 GO:0005515
Viun5g02719 185 SMART WD40_4 35 74 IPR001680 GO:0005515
Viun5g02719 185 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 85 161 IPR033010 GO:0010997|GO:0097027|GO:1904668
Viun5g02719 185 Gene3D - 1 79 IPR015943 GO:0005515
Viun5g02719 185 Gene3D - 80 159 IPR015943 GO:0005515
Viun5g02719 185 ProSiteProfiles Trp-Asp (WD) repeats profile. 42 74 IPR001680 GO:0005515
Viun5g02719 185 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 42 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02719 Viun-Chr5 38645857 38652579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02719 76 182 U-box Gene Family AT1G04510 27.523 6.82e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02719 K03364 - vun:114184691 377.096