Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02710 ATGGCCACCTCTCACTCTGTTTCAGACTCACGTGTCTCACGCATGCACTACTCCTCCACTGATGAAGACCAAGACGGTGATGACGAAGAGGACGAGGAAGACAATGACTTCAACTTCTACGACACTAATGTCGGTGTCGAAGACGAGACCAAGAAACCCGACATCTTTTCCGGCAGCGGTTTCTGGCGGGAGTCCGGGGTGGTGTTGGACCCACGAGCCAAGTGGGTTCAAGAATGGAACAGGGTGTTCCTCCTGGTGAGCACCACGGGGCTTTTTGTGGATCCGCTGTTCTTCTACGCACTGTCCATAAGCGACACGTGTATGTGCCTTTTCATCGACGGCTGGCTCGTGGTCACCGTCACGGTGCTCCGGTGCATGACCGATACATTGCACGTGTGGAACATGTGGCTCCAGTTCAAGATGGCTAAACGCTCTTCTTCTCTCGCCAGAAACGCTCACGCCTCTCGCGGTGGCTGTGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGACCTCTTCGTCATCTTCCCTATTCCCCAGATTGTGCTATGGGTGGTAATTCCCTCTCTTTTGGAGAAAGGATCAATTACATTAGTGATGACAGTGTTCTTAATCATGTTCCTCTTTCAGTATCTTCCCAAAATTTATCACTCAGTTTGCCTCTTGCGTCGCATGCAAAACCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAGTGTTTGGAAGAACAGTGTGCAAAAACAGAAGGTTGTGGTTTGAGAACACTGTGCTGCAAAAAGCCTATATACTATGGAGGAAGTAGCATTGTAAGGGACAAAACGAGATTGGCATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAATGCTGATAACTACGATTATGGTGCATACGCATGGTCTGTTCAACTCATCACAAACGATAGCAGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATTATTGTGCTCACCAGTGGCCTCCTTCTAGTGACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGAAACATTGAATGGTGGATGAGCAAAAGGAAGTTACCACAAAGTTTCAGGCAGCGCGTGAGAAACTATGAGAGGCAGCGTTGGGCTGCCATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCTGAGGGACTAAGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTGAGACAGGTGCCACTGTTTCAGCACATGGACGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAAGGAGAAACAATAACGAGAGAGGGAGACCCGGTTCAGAGAATGTTATTTGTCGTACGAGGTCACCTTCAAAGCAGCCAAGTTCTACGAGACGGGGTGAAAAGCTACTGCATGTTAGGCCCGGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTCTGAGACGGCCGTTCATAGAGCGTCTTCCGCCGTCATCAAGCACTTTGGTGACACTTGAAGCGACGGAGGCATTTGGGTTGGAAGCAAAGGACGTGAAGTACGTGACGCAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCGGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCGTGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCCTTCATAAGGCCTCGGAGACCTGCCTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGTCTGTATACGGCGTTGTTAACCTCACCAAAGCCTAATCAGGATCAATTTGACTTCTGA 2025 0.4859 MATSHSVSDSRVSRMHYSSTDEDQDGDDEEDEEDNDFNFYDTNVGVEDETKKPDIFSGSGFWRESGVVLDPRAKWVQEWNRVFLLVSTTGLFVDPLFFYALSISDTCMCLFIDGWLVVTVTVLRCMTDTLHVWNMWLQFKMAKRSSSLARNAHASRGGCALRYLKAKRGFFFDLFVIFPIPQIVLWVVIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTEGCGLRTLCCKKPIYYGGSSIVRDKTRLAWAENREARSTCLDNADNYDYGAYAWSVQLITNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRKLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDQFDF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02710 674 Gene3D Helix hairpin bin 402 468 - -
Viun5g02710 674 Pfam Ion transport protein 79 394 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun5g02710 674 FunFam cyclic nucleotide-gated ion channel 4 475 593 - -
Viun5g02710 674 SMART cnmp_10 477 606 IPR000595 -
Viun5g02710 674 MobiDBLite consensus disorder prediction 22 38 - -
Viun5g02710 674 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Viun5g02710 674 Gene3D Jelly Rolls 475 593 IPR014710 -
Viun5g02710 674 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 639 - -
Viun5g02710 674 SUPERFAMILY Voltage-gated potassium channels 71 398 - -
Viun5g02710 674 CDD CAP_ED 477 583 IPR000595 -
Viun5g02710 674 Pfam Cyclic nucleotide-binding domain 497 585 IPR000595 -
Viun5g02710 674 ProSiteProfiles cAMP/cGMP binding motif profile. 477 587 IPR000595 -
Viun5g02710 674 SUPERFAMILY cAMP-binding domain-like 403 591 IPR018490 -
Viun5g02710 674 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02710 Viun-Chr5 38525198 38530335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02710 57 673 Ion Channels AT5G54250 77.636 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02710 K05391 - gmx:100800795 1172.15