Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02709 ATGGCCACCTCTCACTCTGTTTCAGACTCACGTGTCTCACGCATGCACTACTCCTCCACTGATGAAGACCAAGACGGTGATGACGAAGAGGACGAGGAAGACAATGACTTCAACTTCTACGACACTAATGTCGGTGTCGAAGACGAGACCAAGAAACCCGACATCTTTTCCGGCAGCGGTTTCTGGCGGGAGTCCGGGGTGGTGTTGGACCCACGAGCCAAGTGGGTTCAAGAATGGAACAGGGTGTTCCTCCTGGTGAGCACCACGGGGCTTTTTGTGGATCCGCTGTTCTTCTACGCACTGTCCATAAGCGACACGTGTATGTGCCTTTTCATCGACGGCTGGCTCGTGGTCACCGTCACGGTGCTCCGGTGCATGACCGATACATTGCACGTGTGGAACATGTGGCTCCAGTTCAAGATGGCTAAACGCTCTTCTTCTCTCGCCAGAAACGCTCACGCCTCTCGCGGTGGCTGTGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGACCTCTTCGTCATCTTCCCTATTCCCCAGATTGTGCTATGGGTGGTAATTCCCTCTCTTTTGGAGAAAGGATCAATTACATTAGTGATGACAGTGTTCTTAATCATGTTCCTCTTTCAGTATCTTCCCAAAATTTATCACTCAGTTTGCCTCTTGCGTCGCATGCAAAACCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAGTGTTTGGAAGAACAGTGTGCAAAAACAGAAGGTTGTGGTTTGAGAACACTGTGCTGCAAAAAGCCTATATACTATGGAGGAAGTAGCATTGTAAGGGACAAAACGAGATTGGCATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAATGCTGATAACTACGATTATGGTGCATACGCATGGTCTGTTCAACTCATCACAAACGATAGCAGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATTATTGTGCTCACCAGTGGCCTCCTTCTAGTGACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGAAACATTGAATGGTGGATGAGCAAAAGGAAGTTACCACAAAGTTTCAGGCAGCGCGTGAGAAACTATGAGAGGCAGCGTTGGGCTGCCATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCTGAGGGACTAAGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTGAGACAGCACATGGACGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAAGGAGAAACAATAACGAGAGAGGGAGACCCGGTTCAGAGAATGTTATTTGTCGTACGAGGTCACCTTCAAAGCAGCCAAGTTCTACGAGACGGGGTGAAAAGCTACTGCATGTTAGGCCCGGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTCTGAGACGGCCGTTCATAGAGCGTCTTCCGCCGTCATCAAGCACTTTGGTGACACTTGAAGCGACGGAGGCATTTGGGTTGGAAGCAAAGGACGTGAAGTACGTGACGCAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCGGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCGTGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCCTTCATAAGGCCTCGGAGACCTGCCTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGTCTGTATACGGCGTTGTTAACCTCACCAAAGCCTAATCAGGATCAATTTGACTTCTGA 2010 0.4856 MATSHSVSDSRVSRMHYSSTDEDQDGDDEEDEEDNDFNFYDTNVGVEDETKKPDIFSGSGFWRESGVVLDPRAKWVQEWNRVFLLVSTTGLFVDPLFFYALSISDTCMCLFIDGWLVVTVTVLRCMTDTLHVWNMWLQFKMAKRSSSLARNAHASRGGCALRYLKAKRGFFFDLFVIFPIPQIVLWVVIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTEGCGLRTLCCKKPIYYGGSSIVRDKTRLAWAENREARSTCLDNADNYDYGAYAWSVQLITNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRKLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDQFDF 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02709 669 Pfam Ion transport protein 79 394 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun5g02709 669 SUPERFAMILY cAMP-binding domain-like 403 586 IPR018490 -
Viun5g02709 669 FunFam cyclic nucleotide-gated ion channel 4 471 588 - -
Viun5g02709 669 Gene3D Helix hairpin bin 402 468 - -
Viun5g02709 669 Gene3D Jelly Rolls 474 588 IPR014710 -
Viun5g02709 669 MobiDBLite consensus disorder prediction 22 38 - -
Viun5g02709 669 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Viun5g02709 669 ProSiteProfiles cAMP/cGMP binding motif profile. 472 582 IPR000595 -
Viun5g02709 669 SUPERFAMILY Voltage-gated potassium channels 71 398 - -
Viun5g02709 669 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 634 - -
Viun5g02709 669 Pfam Cyclic nucleotide-binding domain 492 580 IPR000595 -
Viun5g02709 669 CDD CAP_ED 474 578 IPR000595 -
Viun5g02709 669 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02709 Viun-Chr5 38525197 38530335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02709 57 668 Ion Channels AT5G54250 76.837 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02709 K05391 - gmx:100800795 1155.97