Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02702 ATGAACGGTAAGGCTAACGTCACCAAAGAGCTCAACGCTAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGACAATAGAGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGTATGCAGTGTTCGGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACCCTTGACACTTGGCTTCCGGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATAACTACTGGGAAGCAGAATTACCACCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGATTCCAAGGGATGGGAATCCAAAAACACCTTCTGGATTGCGGGAAGAAAGAAGTCCTTCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTCATACTGTTGTTTCTGAAAAAAAATTTGAGGAAAAGAAGAAATTCCAACAGTCAAATGCAATTCCTGCTACACGAAACAGTGTTCCTGCTCCTGCTCCTCCCAAAGCACCGGAGCAAGTAACTCCTATTACCAAACCTCAGCCTGTTGAGAAAGTGGAACCATTAGCACCACAGCCACAAGCTGAATCTTCAAAGCAAGCTATGGATGCAGTTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGTCCCCAAAGAAAATGGCTCTGAGTCGGCCAGTACAACTACTGATGATAATCTCTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCGCCAAAAGCAGCTGATAATAGTACTCTGCCGTCTGCAACTGGTATTGAGGATCTTTTCAAAGATTCACCTTCTATGATGCCAAGCTTAACTCCAGAAAAGCCACAGAAAGATGTTAAAAATGATATAATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAGCAACAGATTGCCATGCTTGCACAGCAACAGTCTCTTCTGATGGCTGCTGCAGCTAAGTCTTCTGGTGGGGATCTCAAGTATCCTGCTGGCATACAAGAACCTAGACCAAATGTTCCTGTGCAAAGTTGGCCAGCTACTGGCTACTCGATTTCTGGAGTATTGCCCATGCAGGTAATGACTGAAGTAAGCCAAATGTTAATAATCAGTTATTGGTTTTGCCCAGCAACTAACTTGTTTCTTTTCTATCAGGGGCCGATTACGAACATGACCCCAGCACATTTTGCTGGGAGCCCTGTACAATATCAACCATCCAGTTTCTATGGTATGGGGCAAGTTCCACCTCCAGTTAACGGTGTGATGGCGACAATGGGAGCGAGTAAACCCCAGTCAGGAGCTCCAGTGTCATCTAGCAGTACACAGTCAGCGAAGGATTATGATTTTTCGTCCTTAACACAGGGGATGTTTGCGAAACACTGA 1491 0.4413 MNGKANVTKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANNYWEAELPPNYDRVGIENFIRAKYDEKRWIPRDGNPKTPSGLREERSPSHWQRPVERSGHTVVSEKKFEEKKKFQQSNAIPATRNSVPAPAPPKAPEQVTPITKPQPVEKVEPLAPQPQAESSKQAMDAVQNTPPKVDYATDLFNMLSMDVPKENGSESASTTTDDNLWAGFQSAAEVSTAEKTSPPKAADNSTLPSATGIEDLFKDSPSMMPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQIAMLAQQQSLLMAAAAKSSGGDLKYPAGIQEPRPNVPVQSWPATGYSISGVLPMQVMTEVSQMLIISYWFCPATNLFLFYQGPITNMTPAHFAGSPVQYQPSSFYGMGQVPPPVNGVMATMGASKPQSGAPVSSSSTQSAKDYDFSSLTQGMFAKH 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02702 496 CDD ArfGap 19 117 - -
Viun5g02702 496 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Viun5g02702 496 MobiDBLite consensus disorder prediction 269 292 - -
Viun5g02702 496 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Viun5g02702 496 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Viun5g02702 496 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Viun5g02702 496 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Viun5g02702 496 MobiDBLite consensus disorder prediction 269 315 - -
Viun5g02702 496 MobiDBLite consensus disorder prediction 460 479 - -
Viun5g02702 496 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 496 IPR044520 GO:0005096
Viun5g02702 496 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Viun5g02702 496 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Viun5g02702 496 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Viun5g02702 496 MobiDBLite consensus disorder prediction 122 223 - -
Viun5g02702 496 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Viun5g02702 496 MobiDBLite consensus disorder prediction 179 193 - -
Viun5g02702 496 MobiDBLite consensus disorder prediction 122 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02702 Viun-Chr5 38404652 38410105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02702 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 1.42e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02702 K12486 - gmx:100789910 758.829