Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02701 ATGAACGGTAAGGCTAACGTCACCAAAGAGCTCAACGCTAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGACAATAGAGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGTATGCAGTGTTCGGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACCCTTGACACTTGGCTTCCGGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATAACTACTGGGAAGCAGAATTACCACCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGATTCCAAGGGATGGGAATCCAAAAACACCTTCTGGATTGCGGGAAGAAAGAAGTCCTTCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTCATACTGTTGTTTCTGAAAAAAAATTTGAGGAAAAGAAGAAATTCCAACAGTCAAATGCAATTCCTGCTACACGAAACAGTGTTCCTGCTCCTGCTCCTCCCAAAGCACCGGAGCAAGTAACTCCTATTACCAAACCTCAGCCTGTTGAGAAAGTGGAACCATTAGCACCACAGCCACAAGCTGAATCTTCAAAGCAAGCTATGGATGCAGTTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGTCCCCAAAGAAAATGGCTCTGAGTCGGCCAGTACAACTACTGATGATAATCTCTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCGCCAAAAGCAGCTGATAATAGTACTCTGCCGTCTGCAACTGGTATTGAGGATCTTTTCAAAGATTCACCTTCTATGATGCCAAGCTTAACTCCAGAAAAGCCACAGAAAGATGTTAAAAATGATATAATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAGCAACAGATTGCCATGCTTGCACAGCAACAGTCTCTTCTGATGGCTGCTGCAGCTAAGTCTTCTGGTGGGGATCTCAAGTATCCTGCTGGCATACAAGAACCTAGACCAAATGTTCCTGTGCAAAGTTGGCCAGCTACTGGCTACTCGATTTCTGGAGTATTGCCCATGCAGGGGCCGATTACGAACATGACCCCAGCACATTTTGCTGGGAGCCCTGTACAATATCAACCATCCAGTTTCTATGGTATGGGGCAAGTTCCACCTCCAGTTAACGGTGTGATGGCGACAATGGGAGCGAGTAAACCCCAGTCAGGAGCTCCAGTGTCATCTAGCAGTACACAGTCAGCGAAGGATTATGATTTTTCGTCCTTAACACAGGGGATGTTTGCGAAACACTGA 1413 0.4473 MNGKANVTKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANNYWEAELPPNYDRVGIENFIRAKYDEKRWIPRDGNPKTPSGLREERSPSHWQRPVERSGHTVVSEKKFEEKKKFQQSNAIPATRNSVPAPAPPKAPEQVTPITKPQPVEKVEPLAPQPQAESSKQAMDAVQNTPPKVDYATDLFNMLSMDVPKENGSESASTTTDDNLWAGFQSAAEVSTAEKTSPPKAADNSTLPSATGIEDLFKDSPSMMPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQIAMLAQQQSLLMAAAAKSSGGDLKYPAGIQEPRPNVPVQSWPATGYSISGVLPMQGPITNMTPAHFAGSPVQYQPSSFYGMGQVPPPVNGVMATMGASKPQSGAPVSSSSTQSAKDYDFSSLTQGMFAKH 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02701 470 CDD ArfGap 19 117 - -
Viun5g02701 470 MobiDBLite consensus disorder prediction 269 292 - -
Viun5g02701 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 470 IPR044520 GO:0005096
Viun5g02701 470 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Viun5g02701 470 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Viun5g02701 470 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Viun5g02701 470 MobiDBLite consensus disorder prediction 440 454 - -
Viun5g02701 470 MobiDBLite consensus disorder prediction 269 315 - -
Viun5g02701 470 MobiDBLite consensus disorder prediction 433 454 - -
Viun5g02701 470 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Viun5g02701 470 MobiDBLite consensus disorder prediction 122 223 - -
Viun5g02701 470 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Viun5g02701 470 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Viun5g02701 470 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Viun5g02701 470 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Viun5g02701 470 MobiDBLite consensus disorder prediction 179 193 - -
Viun5g02701 470 MobiDBLite consensus disorder prediction 122 167 - -
Viun5g02701 470 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02701 Viun-Chr5 38404652 38410117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02701 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 1.14e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02701 K12486 - gmx:100789910 759.985