Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02697 ATGGCATTACCTTCCCTCACAAACCATACTTCTACCAACATAATTCTATATGGTTATTTGGTTGAGTGTGTTCTTGGTGCCTCTGTTTTGTTGTTGTTATTTGGTTCACTTTGTTATTGCTTGTTAGTAGCTCGCAGGTCCAAGGGAAAAACTTCTGCAAGTGAATTGTCACCAACTAGTTCTTCTTGCAGAGTGTTTACATTCCAAGAGGTTCAACACGCAACCAGCAATTTTGAAGAGTGTTTTCTCCTTGGAAGTGGTGGGTTTGGGAAAGTGTACAAGGGAAAACTTGAAAACGGGGCAGAAGTAGCAGTCAAAAGAGCAAACCCTGAATCAAAACAAGGCTTGACCGAGTTCCAAAACGAGATTCGTTTGTTATCCAAACTTCAACACCCTCATATCGTGTCTCTTATAGGCTACTGCCACGAAGGGGATGAAATGGTTATCGTGTATGAGTACATGGGCAATGGCTCTTTGAGCAAATGGCTCTACGAACCAAACGAGACACCACTCTCTTGGAAGCAGCGACTTGAAATTTGCATTGGAGCTGCCAGAGGGCTTCACCATCTTCACACTGCCACTGTTGAAGGCATAATTCATAGGGATGTGAAAAGTTCCAACATTCTCTTGGATGGGAACTTTGTTGCCAAAGTAGCAGACTTTGGCATCTCAGAAAAAGGGCCTTCTTCTCTTGATGAGAGCCATGTTGTGATTAGTGTGAAGGGCACTTTTGGTTACATAGATCCTGAGTACTTCAGAAGTAGCCTTCTGACTGAAAAATCAGATGTGTATTCATTTGGGGTGGTTCTGATAGAAGTTATCTCTGGTAGGCCTGCTTTGGACCATAGTCTTCCAACAGAGAAAATCAGTTTAGCATCATGGGCATTGGATTCTGAACTAAATGGTGAGTTACATCATGAGATGATTGACCCAAATCTAGTTGGAAAAGTGAGTGTTTCTTCTCTTGAAAAGGTGTGGGGAGTGGCTAAAAGGTGCTTAGCCGAGAATGGGATCAAGAGACCACCAATGGGTTTTGTCCTTTGTTGTTTAGAAGATGCTCTCCATCTTCAACTCAGCAACGTAAAAAATGAGAAAACTTCGTTTTTAGATTACGATTTGCAACATAATGCCGAGTGGTCTTTGAACCAGATCACTGTTTCAGTATAA 1167 0.4207 MALPSLTNHTSTNIILYGYLVECVLGASVLLLLFGSLCYCLLVARRSKGKTSASELSPTSSSCRVFTFQEVQHATSNFEECFLLGSGGFGKVYKGKLENGAEVAVKRANPESKQGLTEFQNEIRLLSKLQHPHIVSLIGYCHEGDEMVIVYEYMGNGSLSKWLYEPNETPLSWKQRLEICIGAARGLHHLHTATVEGIIHRDVKSSNILLDGNFVAKVADFGISEKGPSSLDESHVVISVKGTFGYIDPEYFRSSLLTEKSDVYSFGVVLIEVISGRPALDHSLPTEKISLASWALDSELNGELHHEMIDPNLVGKVSVSSLEKVWGVAKRCLAENGIKRPPMGFVLCCLEDALHLQLSNVKNEKTSFLDYDLQHNAEWSLNQITVSV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02697 388 Pfam Protein tyrosine and serine/threonine kinase 84 279 IPR001245 GO:0004672|GO:0006468
Viun5g02697 388 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Viun5g02697 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 385 - -
Viun5g02697 388 ProSiteProfiles Protein kinase domain profile. 78 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02697 388 CDD STKc_IRAK 84 347 - -
Viun5g02697 388 SUPERFAMILY Protein kinase-like (PK-like) 52 350 IPR011009 -
Viun5g02697 388 FunFam PTI1-like tyrosine-protein kinase 3 154 365 - -
Viun5g02697 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Viun5g02697 388 Gene3D Phosphorylase Kinase; domain 1 41 153 - -
Viun5g02697 388 FunFam receptor-like protein kinase FERONIA 43 153 - -
Viun5g02697 388 Gene3D Transferase(Phosphotransferase) domain 1 154 376 - -
Viun5g02697 388 SMART serkin_6 78 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02697 Viun-Chr5 38386440 38387606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02697 48 387 Receptor kinase-like Gene Family AT2G39360 51.320 1.38e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g02697 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02697 - - vun:114184690 769.229