Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02678 ATGGAGAGCACCGACTCCTCCACCGGTTCACAACAGCAGCCGCAATTGCCACCTGGCTTCCGGTTCCACCCCACCGACGAGGAGCTCGTGGTCCACTACCTCAAGAAAAAAGCAGCTTCGGTTCCTCTTCCCGTCGCCATAATCGCCGAGGTCGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTCAGTCCGAGGGACAGGAAGTATCCGAACGGAGCGAGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAAGCCACTGGGACTGATAAGCCTGTGTTAACCTCTGGGGGAACCCAGAAGGTTGGAGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGAATCAAAACTAATTGGATCATGCATGAGTATAGGCTCGCTGATAACAAGCCTAACAATAGGCCTCCTGGATGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCGATGGAGCATGACAGGGAAGATTCAATGGAAGAGATGATCGGAGGGATTCCTCCGTCGATCAACGTGGGGCACATGAGTGGGAGGTATCATCATCATCATCATCATCATCATAACCATCTTTCAAAGATGTCGACAGGCTACAGCAGTGCATTGCTGGAAAATGACCAGAACCTGTTGGAAGGGATGATGATAGGGAACGGATCAGTGATGAACACAAGCACTACTGCCATGGGGGCTTCAAACTCCAACAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTGCAAAAGAACACTGTCGTCGCTGTATTGGAACGATGAGGATGTGGGTGGAACCTCATCATCGAACAAGAGGTTCAATTTGGAAAGTGGGGACAACAATAATAATCATGGAAGTGTTGTGAGAACTGATCAAGATAATGGCACCGCCACCTCAATCGTGACTCTGCTTAACCAGCTCCCTCAGACCCCTTCATTGCACCAGCAATCCATGTTGGGATCCATAGGCGATGGACTACTTCGGACAACAACATATCAAATACCAGGAATGAATTGGTATGCTTAG 1131 0.4987 MESTDSSTGSQQQPQLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEEMIGGIPPSINVGHMSGRYHHHHHHHHNHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTAMGASNSNKAELSFVPTMTHSSNTCKRTLSSLYWNDEDVGGTSSSNKRFNLESGDNNNNHGSVVRTDQDNGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTTYQIPGMNWYA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02678 376 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Viun5g02678 376 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Viun5g02678 376 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g02678 376 PANTHER NAC TRANSCRIPTION FACTOR 56 16 229 - -
Viun5g02678 376 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Viun5g02678 376 FunFam NAC transcription factor 56 25 182 - -
Viun5g02678 376 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Viun5g02678 376 MobiDBLite consensus disorder prediction 1 18 - -
Viun5g02678 376 MobiDBLite consensus disorder prediction 302 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02678 Viun-Chr5 38169866 38172210 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02678 1 376 NAC Transcription Factor Family AT3G15510 54.264 2.97e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g02678 NAM 2.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02678 - - vra:106763825 720.309