Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02676 ATGGGAGTTCCAGAGAAAGACCCTCTTGCCCAGTTGAGTCTACCCCCTGGTTTTCGGTTCTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTCTGCCGCAAAGTCGCCGGCCACCATTTCTCTCTCCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAGCAAGGCGATTTTCGGGGAAAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGGTACTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCTCTGGTTTTTTACGTTGGCAAAGCTCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTACCCGAAAGACCACCGGAACCAAGCTGGATGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGGCGGTGCAGAACGGCATCGTTTCGAGCAGGGAACACACTCAATACAGCAACGGTTCGTCGTCGTCGTCGTCGTCCCACCTGGACGACGTTCTGGAATCGCTGCCGACGATCGACGAACGGTGTTTCGCGATGCCACGTGTCAGCACGGTGCAGCCACAGCACGAGGAGAAGATGAGCGTGCATCAGAACCTGGGTGCGGGTGGGTTGGTGGATTGGGCCAACCCTGCGGTTCTGAATTCGGTGGGTGATTTCGTTTCGGGGAATAATCAAGTGGTGCAGGAGCATACGCAGGGGATGGTGAACTACGGCGGGTGCAATGACCTTTATGTCCCCACCTTATGCCACGTGGACTCTGCACTTCCGCAAAAGGTGGAGGAAGAGGTGCAAAGCGGCGTGAGAAGCCAAAACAATAACGCGTGGTTTCATCAGAACGATTTTACGCAGGGGTATCAGAACACTGTGGACACTTATGGGTTCAAGTTCCCGGTTCAGCCGGTGGGGTTCGGGTTCAGGCAATGA 1023 0.5327 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSTRKTTGTKLDDWVLCRIYKKNSSAQKAVQNGIVSSREHTQYSNGSSSSSSSHLDDVLESLPTIDERCFAMPRVSTVQPQHEEKMSVHQNLGAGGLVDWANPAVLNSVGDFVSGNNQVVQEHTQGMVNYGGCNDLYVPTLCHVDSALPQKVEEEVQSGVRSQNNNAWFHQNDFTQGYQNTVDTYGFKFPVQPVGFGFRQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02676 340 FunFam NAC domain-containing protein 72-like 23 167 - -
Viun5g02676 340 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Viun5g02676 340 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Viun5g02676 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 221 - -
Viun5g02676 340 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Viun5g02676 340 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02676 Viun-Chr5 38122439 38124185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02676 1 338 NAC Transcription Factor Family AT1G52890 58.601 6.25e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g02676 NAM 6.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02676 - - gmx:100170718 613.994