Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02669 ATGAGCAAAGCCCTGGGAGAAGAAGAAGACGAAGAAGAACAAGAACGAGACCAGGACCAAGACCAAGACTGTTTCTACGACTCAAACGACCGTTTACTCTCTCTCTCCTCCTCCTGTTCATGCTCCAACTCCAACTCCGACAACGACGAAACCGAGAACGAACCCCAGCCCCATCGAAACGACACACTCCCCAATTTCCCCCTAACCAACAACTACGACATATGGATCTCCCAACCCACCTCTGTCTCCGAGCGACGCACGCGCCTCCTACTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTCCCCCACGCGATCGCGTTTCCCCAATCCGATCCAAATCCGACGTCACCACCACAAATACAACCACCACCACCGCCGCCGCCGCCACCTCATCCTCCGCCGGCGCCGCCAATCCTAGGCCTCCGAACCCCAAGCCTCCTTCCGAAGAGCTCTGCACGATACGCGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACGGGGAGGCACTTGACGATGGAGGAGTTCGAGATGACGGTGGGGCACTCCCCCATCGTTCAGGAGCTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTCGATTCCAATGCGACTGGCTCCAAGGTGAAGAAGAAAGGTGGGGGGTGGTTGAAGAGTATCAAGAGTGTCGCGAGCTCCGTCGCCGGGTACAGGGATCGACGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACCGATGACAGCCAGGACGCCGCGTTTCACGGTCCGGAGAGGGTGAGAGTGAAGCAGTACGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGTGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTCGATAGGGAGAAGGGGGAGGATGGGGGGAGTGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAACCGACGGCTGCGGCAATGCTGTCTCCGCTCAGGGATGTGGAGAGGAAGAGGAAGGGAAGGTCCAGCGTGAGTAGGAAGTCCTTGAGCCTCGACCAGTTTGTCGTGCCGCAGACCGTGTTTGCACTCACTGACAAACCAGTTTGCTCCTTTCAGGGACATCTTCATGATGTTCTTGATCTCTCATGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTTTGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCGGATCGAAAAGTTGTTGATTGGACAGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGCCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCACTTATATAATACATCTGAAAATAAGTTGCATCAGAAAAGTCAGATCAATCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGATTCCAGTTTGCCCCTGGAAGTTCATCAGAGGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTGTTGATCTGGTCCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCTCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCGAACAGAAGCAAAGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGATGCATGGGACATACAGGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAATGTTGATGAAGTTGCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTGAGTGAGGGTTCAAGATCTGCATCTGGTTACAACAATAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACCTGGCCAGAGGAAAAACTTGTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTGAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGAATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2385 0.5069 MSKALGEEEDEEEQERDQDQDQDCFYDSNDRLLSLSSSCSCSNSNSDNDETENEPQPHRNDTLPNFPLTNNYDIWISQPTSVSERRTRLLLSLGLSSLTRQNPHPPPRDRVSPIRSKSDVTTTNTTTTTAAAATSSSAGAANPRPPNPKPPSEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNATGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGSVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDFVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRKVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLHQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDDAWDIQDTFSGEQPELDNNVDEVASANHPPTPVEENFVSEGSRSASGYNNSPRHATIASATNSYFFDRISATWPEEKLVLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02669 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 493 - -
Viun5g02669 794 FunFam Transducin/WD40 repeat-like superfamily protein 260 367 - -
Viun5g02669 794 Gene3D - 380 650 IPR015943 GO:0005515
Viun5g02669 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Viun5g02669 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 459 IPR001680 GO:0005515
Viun5g02669 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 335 - -
Viun5g02669 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 493 IPR001680 GO:0005515
Viun5g02669 794 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Viun5g02669 794 PRINTS G protein beta WD-40 repeat signature 479 493 IPR020472 -
Viun5g02669 794 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Viun5g02669 794 Gene3D - 245 370 IPR015943 GO:0005515
Viun5g02669 794 MobiDBLite consensus disorder prediction 1 71 - -
Viun5g02669 794 SMART WD40_4 412 450 IPR001680 GO:0005515
Viun5g02669 794 SMART WD40_4 495 533 IPR001680 GO:0005515
Viun5g02669 794 SMART WD40_4 453 492 IPR001680 GO:0005515
Viun5g02669 794 SMART WD40_4 295 334 IPR001680 GO:0005515
Viun5g02669 794 SMART WD40_4 546 585 IPR001680 GO:0005515
Viun5g02669 794 SMART WD40_4 586 627 IPR001680 GO:0005515
Viun5g02669 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 453 - -
Viun5g02669 794 MobiDBLite consensus disorder prediction 691 715 - -
Viun5g02669 794 PANTHER WD REPEAT DOMAIN 44 16 791 IPR040324 -
Viun5g02669 794 MobiDBLite consensus disorder prediction 244 265 - -
Viun5g02669 794 MobiDBLite consensus disorder prediction 116 142 - -
Viun5g02669 794 MobiDBLite consensus disorder prediction 97 154 - -
Viun5g02669 794 Pfam WD domain, G-beta repeat 590 627 IPR001680 GO:0005515
Viun5g02669 794 Pfam WD domain, G-beta repeat 414 449 IPR001680 GO:0005515
Viun5g02669 794 Pfam WD domain, G-beta repeat 455 492 IPR001680 GO:0005515
Viun5g02669 794 Pfam WD domain, G-beta repeat 301 333 IPR001680 GO:0005515
Viun5g02669 794 MobiDBLite consensus disorder prediction 27 50 - -
Viun5g02669 794 MobiDBLite consensus disorder prediction 241 278 - -
Viun5g02669 794 FunFam WD repeat-containing protein 44 400 666 - -
Viun5g02669 794 SUPERFAMILY WD40 repeat-like 297 628 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02669 Viun-Chr5 37953393 37959493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02669 407 624 U-box Gene Family AT1G04510 26.891 1.06e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02669 K20241 - gmx:100815065 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02669 5 37953393 37959493 Viun5g02669 5 37953393 37959493 ECH