LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02627	ATGGGTGGCATGTGTTGCAAGCCCTCTGCCATTGAAGACAGTAAGGAGAGTCCAAGGGAGCGTTTATCGAGCAAGGCTGTGTCGGACTTGCGTGTATCTAGGGGAACTTCATCGAGGAGGGAGGAAGTGTTTAGGGTAAAAGATAGATATGATAACAATGAGGGAAGAACTGCATTGATCGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGAGATAGTATTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCCACATCCCGCGATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTTGCTGGAGAGGCTATCAGGGGATGGCTCCCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAAAAAAAGATTGTTGCTCTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGCAGGCTGGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTCACTGAAGCTCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATTAAGGGTTCTAATCTTTTGATTGACAACAATGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAGCTCAGCCATTGACGAGCCGAGTTGTCACTCTTTGGTATAGGCCACCTGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCAGTAGACCTATGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGGAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGAAGATGTGTTTCTGAAACATTCAAGGACTTTCCTACACCTGCAATAGACTTGATAGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATTAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAGGTGCGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCTTGAGAGAAAAGGCACAAGAGAATCACGAGCAATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAAGAGGCAAGGGCAGGGTAATTCTCAAAGCAGGAGTGAGAAGTTTAACCCCCATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGACCCCCCTAGACCATCACAAGCTGCAGGAGTGAGTGTGGATCCCCCTGTTCATCAACACAAAAGAGCTTCCCATTCAGGTCCACTGACACACCGTGCAGCATGGGCCAAGGCCGGTAAGAACCAGGAAGATGCTCCAAAGATTTCCATGGGCGGCGACTTATCAACAATATCAGGCTTAGTCGCTGCAAGGAGGAGTATGCTCTCTGACGATCGCAGAGAAAGGTCTGGATCATCACAAGCAGATACCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGATGCAACAGGATCAGAAGAATAATCATGCACATGCTCCTCAAAAGGAAGAAGGCAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTTGGTTATGGCTCCAAGGGTCATAAAATTCATTATTCTGGGCCTCTGCTGGTTCCATCAAGCAACATGGATCAGATGTTGAAGGACCATGACAGGCAAATTCAAGAGGCTGTTAGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGGAACCAGATAAGCAATTCATTATTTGTTTCTGGTCGTTGA	2130	0.4573	MGGMCCKPSAIEDSKESPRERLSSKAVSDLRVSRGTSSRREEVFRVKDRYDNNEGRTALIDKQGNGSVRVQGDSIERKREKMEYAVAPHPAIGSVPKAMEGEQVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPTPAIDLIETLLSIDPADRGTSASALISEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDLERKGTRESRAIPAPDANAELVLSMQKRQGQGNSQSRSEKFNPHPEEVASGFPIDPPRPSQAAGVSVDPPVHQHKRASHSGPLTHRAAWAKAGKNQEDAPKISMGGDLSTISGLVAARRSMLSDDRRERSGSSQADTQKLISRFPGSFKEASESMMQQDQKNNHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQISNSLFVSGR	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02627	709	CDD	STKc_CDK9_like	131	415	-	-
	Viun5g02627	709	PANTHER	CELL DIVISION PROTEIN KINASE	129	421	-	-
	Viun5g02627	709	MobiDBLite	consensus disorder prediction	579	647	-	-
	Viun5g02627	709	Gene3D	Transferase(Phosphotransferase) domain 1	214	454	-	-
	Viun5g02627	709	MobiDBLite	consensus disorder prediction	483	498	-	-
	Viun5g02627	709	FunFam	probable serine/threonine-protein kinase At1g54610	214	455	-	-
	Viun5g02627	709	SUPERFAMILY	Protein kinase-like (PK-like)	125	423	IPR011009	-
	Viun5g02627	709	FunFam	probable serine/threonine-protein kinase At1g54610	118	213	-	-
	Viun5g02627	709	SMART	serkin_6	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02627	709	MobiDBLite	consensus disorder prediction	1	39	-	-
	Viun5g02627	709	MobiDBLite	consensus disorder prediction	434	469	-	-
	Viun5g02627	709	ProSiteProfiles	Protein kinase domain profile.	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02627	709	Pfam	Protein kinase domain	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02627	709	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Viun5g02627	709	Gene3D	Phosphorylase Kinase; domain 1	118	213	-	-
	Viun5g02627	709	MobiDBLite	consensus disorder prediction	12	27	-	-
	Viun5g02627	709	MobiDBLite	consensus disorder prediction	422	542	-	-
	Viun5g02627	709	ProSitePatterns	Protein kinases ATP-binding region signature.	137	160	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02627	Viun-Chr5	37512904	37519725	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02627	123	472	Core Cell Cycle Gene Families	AT5G10270	51.639	3.24e-119	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Viun5g02627		Pkinase	1.5e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02627	-		-	gmx:100792173	1345.1