Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02624 ATGTGTTGTTGGACTTGGCCTACATGCAACTCTAACTGGATGAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAACAGTTCTGGTGTCTCGGACAGAAACCAAAGAGTTCATTATCCAGAAACCAAAGGTGATCAAGCTAAAAATTTGGGTGGTGGGTTTTCTGGGTTGTGTGAAGATGAAGTGGATGTTGACCCCTTTTATGGTGCTGTGGAATGGGGTGATATTAGCTTGAGGCAATGGTTGGATAAACCAGAACGATCGGTCGAGGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCGGATTCTTTAGGAGAAGGATTGAACGACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCTACAACCACTGCTCGCTCTGATTCTAGTTGCATGTTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAACATAAAATGAAAGATAGGAGGAAGGATGAGGAAGTAGAAGGGAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACTCTAGTCCTGAAGAGGTTGCTGGTGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTAGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAGTTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGTGAGTTCCTTAATGAGCAAAGAGATGACATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTGTTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCAGATATTGAAGAAGTGACAAAGCAGCAAGTTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTTCCATCAATGACAGTTGTGGACAGTGATGATTCTGCATATGTAGGGACTAGAAAACGAGTGAGGCTAGGGACTCATGCTAAAAACAATGAGGAATGTGATGATGATGATGATGGAGGGGATGATCAGAAAAGTAATGGAAGTTTTCTTTCAAAAAGTTCACGGCTGATGAAGAACTTTAAAAAACTTGAGTCTGCATACTTTTTAACGCGATGTAGACCGGCCTATCCGTCTGGGAAACTGGTGAGTAGGCATCCTCCTATAACAAGTGATGGTAGAGGATCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACATGAAATCAAAAGAGCAGTGCAGGGAGGGAGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGCAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTATTGCATTCATCCAACCTTGTATGCTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAGATTAAAGTGTTTGAATGTGATTCAATCATAAACGAGGATCGTGATATCCACTACCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGCCAAATTGCTTCAAGCAACTTTGAAGGTGTTGTGCAGTTGTGGGATGTGACAAGAAGTCAAGTACTGTCTGAGATGAGGGAGCACGAGCGGCGTGTGTGGTCGATCGATTTCTCGTCAGCAGATCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGGAGTTAG 2151 0.4254 MCCWTWPTCNSNWMKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPETKGDQAKNLGGGFSGLCEDEVDVDPFYGAVEWGDISLRQWLDKPERSVEAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEIKTPTSLCPHDMHQQSLGSEDFVPVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYSSPEEVAGDSSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQQVRFKEITGTELGSDDRSASSFPSMTVVDSDDSAYVGTRKRVRLGTHAKNNEECDDDDDGGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYPSGKLVSRHPPITSDGRGSVVLTERSCINDMKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAIPFLHLVDVSFETKRS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02624 716 MobiDBLite consensus disorder prediction 25 51 - -
Viun5g02624 716 Coils Coil 338 358 - -
Viun5g02624 716 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Viun5g02624 716 Pfam WD domain, G-beta repeat 573 602 IPR001680 GO:0005515
Viun5g02624 716 ProSiteProfiles Protein kinase domain profile. 1 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02624 716 MobiDBLite consensus disorder prediction 25 43 - -
Viun5g02624 716 Gene3D - 549 711 IPR015943 GO:0005515
Viun5g02624 716 SMART serkin_6 13 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02624 716 PANTHER PROTEIN SPA1-RELATED 2 23 700 IPR044630 GO:0009640
Viun5g02624 716 SUPERFAMILY WD40 repeat-like 575 699 IPR036322 GO:0005515
Viun5g02624 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 698 IPR001680 GO:0005515
Viun5g02624 716 Gene3D Transferase(Phosphotransferase) domain 1 83 353 - -
Viun5g02624 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 698 - -
Viun5g02624 716 MobiDBLite consensus disorder prediction 449 472 - -
Viun5g02624 716 SMART WD40_4 568 603 IPR001680 GO:0005515
Viun5g02624 716 SMART WD40_4 656 696 IPR001680 GO:0005515
Viun5g02624 716 SMART WD40_4 614 653 IPR001680 GO:0005515
Viun5g02624 716 SUPERFAMILY Protein kinase-like (PK-like) 75 343 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02624 Viun-Chr5 37474280 37478395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02624 573 697 Miscellaneous Gene Families AT5G08390 29.600 1.09e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Viun5g02624 WD40 7.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02624 K26557 - gmx:100811457 1280.77