Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02623 ATGTGTTGTTGGACTTGGCCTACATGCAACTCTAACTGGATGAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAACAGTTCTGGTGTCTCGGACAGAAACCAAAGAGTTCATTATCCAGAAACCAAAGGTGATCAAGCTAAAAATTTGGGTGGTGGGTTTTCTGGGTTGTGTGAAGATGAAGTGGATGTTGACCCCTTTTATGGTGCTGTGGAATGGGGTGATATTAGCTTGAGGCAATGGTTGGATAAACCAGAACGATCGGTCGAGGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCGGATTCTTTAGGAGAAGGATTGAACGACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCTACAACCACTGCTCGCTCTGATTCTAGTTGCATGTTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAACATAAAATGAAAGATAGGAGGAAGGATGAGGAAGTAGAAGGGAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACTCTAGTCCTGAAGAGGTTGCTGGTGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTAGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAGTTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGTGAGTTCCTTAATGAGCAAAGAGATGACATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTGTTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCAGATATTGAAGAAGTGACAAAGCAGCAAGTTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTTCCATCAATGACAGTTGTGGACAGTGATGATTCTGCATATGTAGGGACTAGAAAACGAGTGAGGCTAGGGACTCATGCTAAAAACAATGAGGAATGTGATGATGATGATGATGGAGGGGATGATCAGAAAAGTAATGGAAGTTTTCTTTCAAAAAGTTCACGGCTGATGAAGAACTTTAAAAAACTTGAGTCTGCATACTTTTTAACGCGATGTAGACCGGCCTATCCGTCTGGGAAACTGGTGAGTAGGCATCCTCCTATAACAAGTGATGGTAGAGGATCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACATGAAATCAAAAGAGCAGTGCAGGGAGGGAGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGCAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTATTGCATTCATCCAACCTTGTATGCTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAGATTAAAGTGTTTGAATGTGATTCAATCATAAACGAGGATCGTGATATCCACTACCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGCCAAATTGCTTCAAGCAACTTTGAAGGTGTTGTGCAGTTGTGGGATGTGACAAGAAGTCAAGTACTGTCTGAGATGAGGGAGCACGAGCGGCGTGTGTGGTCGATCGATTTCTCGTCAGCAGATCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGAACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCTCTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGCATATATTACTATGATCTTCGCAACCTTAAAATGCCGCTCTGTACTTTGGTTGGACATAACAAGACTGTTAGCTACATCAAGTTTGTAGACACTGTCAACCTTGTCTCAGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCCGCGTGTGCATCTCGAGTTATAGACACACCGATTCAATCATTCACAGGTCACGTGAATGTTAAGAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTTTTCATATACCACAAAGCCTTCCCTATGCCTGCACTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTAACGAAGTGGATGACACGGCGCAATTCGTGTCGTCGGTTTGTTGGCGGGGTCAGTCGTCCACCTTGCTCGCCGCAAATTCGACGGGGAATGTGAAAATTCTGGAGATGGTTTAG 2658 0.4308 MCCWTWPTCNSNWMKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPETKGDQAKNLGGGFSGLCEDEVDVDPFYGAVEWGDISLRQWLDKPERSVEAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEIKTPTSLCPHDMHQQSLGSEDFVPVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYSSPEEVAGDSSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQQVRFKEITGTELGSDDRSASSFPSMTVVDSDDSAYVGTRKRVRLGTHAKNNEECDDDDDGGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYPSGKLVSRHPPITSDGRGSVVLTERSCINDMKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSACASRVIDTPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGNEVDDTAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02623 885 MobiDBLite consensus disorder prediction 25 51 - -
Viun5g02623 885 Coils Coil 338 358 - -
Viun5g02623 885 PANTHER PROTEIN SPA1-RELATED 2 23 885 IPR044630 GO:0009640
Viun5g02623 885 SUPERFAMILY WD40 repeat-like 573 882 IPR036322 GO:0005515
Viun5g02623 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 782 IPR001680 GO:0005515
Viun5g02623 885 Pfam WD domain, G-beta repeat 745 780 IPR001680 GO:0005515
Viun5g02623 885 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Viun5g02623 885 Pfam WD domain, G-beta repeat 573 602 IPR001680 GO:0005515
Viun5g02623 885 ProSitePatterns Trp-Asp (WD) repeats signature. 767 781 IPR019775 -
Viun5g02623 885 ProSiteProfiles Protein kinase domain profile. 1 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02623 885 MobiDBLite consensus disorder prediction 25 43 - -
Viun5g02623 885 SMART WD40_4 742 780 IPR001680 GO:0005515
Viun5g02623 885 SMART WD40_4 789 828 IPR001680 GO:0005515
Viun5g02623 885 SMART WD40_4 568 603 IPR001680 GO:0005515
Viun5g02623 885 SMART WD40_4 656 696 IPR001680 GO:0005515
Viun5g02623 885 SMART WD40_4 848 883 IPR001680 GO:0005515
Viun5g02623 885 SMART WD40_4 614 653 IPR001680 GO:0005515
Viun5g02623 885 SMART WD40_4 699 738 IPR001680 GO:0005515
Viun5g02623 885 SUPERFAMILY Protein kinase-like (PK-like) 75 343 IPR011009 -
Viun5g02623 885 Gene3D Transferase(Phosphotransferase) domain 1 83 353 - -
Viun5g02623 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 705 IPR001680 GO:0005515
Viun5g02623 885 PRINTS G protein beta WD-40 repeat signature 767 781 IPR020472 -
Viun5g02623 885 PRINTS G protein beta WD-40 repeat signature 683 697 IPR020472 -
Viun5g02623 885 PRINTS G protein beta WD-40 repeat signature 640 654 IPR020472 -
Viun5g02623 885 SMART serkin_6 13 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02623 885 Gene3D - 549 885 IPR015943 GO:0005515
Viun5g02623 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 700 - -
Viun5g02623 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 782 - -
Viun5g02623 885 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 546 885 - -
Viun5g02623 885 MobiDBLite consensus disorder prediction 449 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02623 Viun-Chr5 37472890 37478217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02623 653 827 Miscellaneous Gene Families AT5G08390 24.581 2.90e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Viun5g02623 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02623 K26557 - gmx:100811457 1636.31