Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02603 ATGGAGCTTCAGATACGTGTTTTTTGTCTCTTCTTGTTTCTCTCGACTCTGCTCTCGGTGTCTCAGGCCTACACCTTCTACGTTGGTGGAAAAGATGGGTGGGTTTTGTACCCTTCTGAGAATTACAATCACTGGGCTGAAAGGATGAGGTTCCAAGTCAGTGACACTCTCGTTTTCAAGTACAAGAAGGGATCGGACTCGGTTTTGGTGGTCAACAAGGAGGATTATGAGAAATGTAACAAGAAGAACCCGATCAAGAAGCTTGAGGACGGTGACTCCCAGTTTCAGTTTGATCGGTCGGGTCCCTTTTACTTTATCAGTGGCAAAGATGATTACTGTGAAAAGGGTCAGAAACTTATCATTGTGGTGTTGGCTGTGAGAGAGCCTCCTCCATCTCCTCCAAAAACTCCTTATCCACCTCAAACTCCTTCCCCTCCCATTGTTCCTCCAAAAACACCTTCTCCCACTTATGCTCCTTCCCCAAATAACCATCCACCCCATGTTATTCCTTCACCTCCACAAACACCTTCTCCAACTTATACTCCTTCCCCTGGCCACCAACCTTTTGTCCCAATTCCTCCAACCACCCCCTCTCCGATTTCTCAGCCACCCTACACCCCAACCCCTCCCAAAACCCCTTCCCCTACCCATCAACCTCCCTTTGTTCCAGTAACACCATCGCCATTTTCTCAAGCACCTTATGTGCCACCACCACCCAAAACTCCTTCTCCTACCTCCCAACCACCTTACATTCCAACACCGCCCGAAACTCCTTCTTCCTCCCCGATATCTCAGCCACCTTACATTTCCAGACCACCATCCACCACCCCTTCTCCCATTTCCCAACCTCCCTACACCCCACCACCTTCAAACACTCCTTCCCCAACATCTCAACCACCCTACCCTTATCCCAATTCCCCTATCGCTCAACCCCCATTATCAGCATCACCCTATCCATCCACCATCCCTCCCCCATCATACCCACCTTCCACCTTCGCTCCGGCCACTACACCCTCCACTGCGTCGCCACCATCGCCGTCTCCGCCAACCGCCACCTCTCCCCGGGGATCACTACCGGCAGCAACTAGCCCATCGCCATCGTCTTCGTCCGGATCGTCCTCCAACGAAACGACGCCGTCCCGGCCAAACGGCGCCTCGTCTATATCTGAATCGCGTTTTGGACTGTACTCAATAACCATTCTGGTCGGTGCTGCTCTCAGTACCATTCTTGGTTAG 1236 0.5178 MELQIRVFCLFLFLSTLLSVSQAYTFYVGGKDGWVLYPSENYNHWAERMRFQVSDTLVFKYKKGSDSVLVVNKEDYEKCNKKNPIKKLEDGDSQFQFDRSGPFYFISGKDDYCEKGQKLIIVVLAVREPPPSPPKTPYPPQTPSPPIVPPKTPSPTYAPSPNNHPPHVIPSPPQTPSPTYTPSPGHQPFVPIPPTTPSPISQPPYTPTPPKTPSPTHQPPFVPVTPSPFSQAPYVPPPPKTPSPTSQPPYIPTPPETPSSSPISQPPYISRPPSTTPSPISQPPYTPPPSNTPSPTSQPPYPYPNSPIAQPPLSASPYPSTIPPPSYPPSTFAPATTPSTASPPSPSPPTATSPRGSLPAATSPSPSSSSGSSSNETTPSRPNGASSISESRFGLYSITILVGAALSTILG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02603 411 Gene3D - 22 127 IPR008972 -
Viun5g02603 411 MobiDBLite consensus disorder prediction 339 353 - -
Viun5g02603 411 FunFam Early nodulin-like protein 1 23 128 - -
Viun5g02603 411 MobiDBLite consensus disorder prediction 130 390 - -
Viun5g02603 411 MobiDBLite consensus disorder prediction 130 332 - -
Viun5g02603 411 PRINTS Proline rich extensin signature 166 187 - -
Viun5g02603 411 PRINTS Proline rich extensin signature 131 147 - -
Viun5g02603 411 PRINTS Proline rich extensin signature 191 207 - -
Viun5g02603 411 PRINTS Proline rich extensin signature 152 164 - -
Viun5g02603 411 MobiDBLite consensus disorder prediction 354 390 - -
Viun5g02603 411 CDD OsENODL1_like 24 124 IPR041846 -
Viun5g02603 411 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Viun5g02603 411 Pfam Plastocyanin-like domain 34 117 IPR003245 GO:0009055
Viun5g02603 411 PANTHER BLUE COPPER PROTEIN 23 200 IPR039391 GO:0009055
Viun5g02603 411 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02603 Viun-Chr5 37298186 37299910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02603 1 228 Phytocyanin Superfamily AT5G53870 45.690 4.99e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02603 - - var:108333029 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02603 5 37298186 37299910 Viun5g02603 5 37298186 37299910 ECH