Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02590 ATGGAGATCAAGAGTAGAGACAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGAAAGTCCAGTTGAAGTTGAGGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGCGGTGAGGGCTGTCTTGCAGAAGATGAGAGGAAGAAGGGTGGTGCAGGTGGTGGTGGGAGAAGAGGGTCCACTGGGGGTGGAGTTTCTCCACCTTCTTGTCAAGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTGATGGTTGCAGGAATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGACGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAATGAACGGCGCCGGAAGAGCAATGCTGAGACTTGCAGTGAAGGATGCAGCAGCAGCAAAGGACAGAACCCTACAGAAAGCCTATGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCACTTCAGATGA 576 0.5104 MEIKSRDRRQVSIEKVRRESPVEVEDEEEEEDESVAGGEGCLAEDERKKGGAGGGGRRGSTGGGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCSEGCSSSKGQNPTESLCRNADDWGRIQMNMARNSGYRSFHFR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02590 191 MobiDBLite consensus disorder prediction 1 69 - -
Viun5g02590 191 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Viun5g02590 191 MobiDBLite consensus disorder prediction 1 22 - -
Viun5g02590 191 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Viun5g02590 191 MobiDBLite consensus disorder prediction 145 164 - -
Viun5g02590 191 Coils Coil 120 140 - -
Viun5g02590 191 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Viun5g02590 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 157 IPR044817 GO:0003677
Viun5g02590 191 Pfam SBP domain 70 143 IPR004333 GO:0003677
Viun5g02590 191 MobiDBLite consensus disorder prediction 23 39 - -
Viun5g02590 191 MobiDBLite consensus disorder prediction 148 164 - -
Viun5g02590 191 FunFam Squamosa promoter-binding-like protein 14 61 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02590 Viun-Chr5 37091810 37093160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02590 3 184 SBP-box Gene Family AT3G60030 43.299 3.85e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun5g02590 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02590 - - gmx:100305703 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02590 5 37091810 37093160 Viun6g02764 6 31473545 31475527 ECH
Viun5g02590 5 37091810 37093160 Viun5g02590 5 37091810 37093160 ECH