Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02588 ATGACCACCAGAGAAATCCTTAACAAGATGAAGGTAAAAGTTGGTTTGGGTTCATCAGACACTGATTCAGGGAAAGGCAAGAGCAAGATGTCGAAGAACATAACTCATGGCTTTCACTTGGTAAAAGGAAAATCATATCATGACATGGAGGATTATGTTGTTGCTCAATTTAAGCAAGTAGATAGCAATGAATTAGGTTTGTTTGCAATATTTGATGGACATGCCGGTCACAATGTACCTAATTACCTGCAGTCTCATTTGTTTGACAATATCTTAAAAGAGCCTGACTTCTGGAAAGAACCTGCAGATGCTGTCAAGAGAGCTTACAGTAAAACTGATTCTAATATTTTAGAGATGTCGGGTGAATTAGGTAGAGGAGGTTCAACTGCAGTTACAGCCATATTAGTCAATTGTCAGAAGTTAATAGTAGCCAACATTGGGGATTCCAGGGCTGTCTTATGCAAGAAGGGTGTGGCCAAACAATTATCAGTGGATCATGAACCAAACACGGAGCACGAAGATATAAAGAATAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTTCCACGGGTTGATGGACGGCTGGCTGTGTCAAGGGCTTTTGGTGACAAAAGCCTGAAGAAACATTTGAGTTCAGAGCCATTTGTGACAGTGGAGAATATAAATGATGATGCAGAGTTCATTATATTAGCCAGTGATGGATTATGGAAGGTCATGTCAAATCAAGAAGCAGTTAATTGTATCAGAAATATAAAGGATGCTCGGTCTTCAGCAAAGCGCCTTACCGAAGAAGCAGTTAACAAGAAAAGCACTGATGATATCTCGTGCATTGTTGTCAAATTTCAGTGA 852 0.3991 MTTREILNKMKVKVGLGSSDTDSGKGKSKMSKNITHGFHLVKGKSYHDMEDYVVAQFKQVDSNELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWKEPADAVKRAYSKTDSNILEMSGELGRGGSTAVTAILVNCQKLIVANIGDSRAVLCKKGVAKQLSVDHEPNTEHEDIKNRGGFVSNFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPFVTVENINDDAEFIILASDGLWKVMSNQEAVNCIRNIKDARSSAKRLTEEAVNKKSTDDISCIVVKFQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02588 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Viun5g02588 283 PANTHER PROTEIN PHOSPHATASE 30 282 IPR015655 GO:0004722|GO:0006470
Viun5g02588 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Viun5g02588 283 ProSitePatterns PPM-type phosphatase domain signature. 67 75 IPR000222 GO:0043169
Viun5g02588 283 Gene3D - 16 283 IPR036457 -
Viun5g02588 283 CDD PP2Cc 36 282 IPR001932 -
Viun5g02588 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Viun5g02588 283 Pfam Protein phosphatase 2C 48 275 IPR001932 -
Viun5g02588 283 SMART PP2C_4 25 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02588 Viun-Chr5 37088390 37091658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02588 1 283 PP2C-type Phosphatase Gene Family AT3G15260 73.702 1.96e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02588 K17506 - gmx:100500617 532.717