Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02582 ATGGACTCCTCCTACCACCATTTGGACCACACTGAGGCTCATCTGCCACCAGGCTTCAGGTTCCACCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCAACTTCACTGGTAGAGCCATCGCTGAAGTAGACCTTAACAAAAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCTACTGGTTTACGAACTAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACCGGGAAAGATAGAGAGATTTACAGCTCCAAGACTTGTTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTAGAGCACCCAAGGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCAAGGACGAGTGGGTCATATCTCGCGTGTTCCAAAAAAGCAACACAACCAACGGAGGCTCAGCTATGTCTGCTTCAAGTGGCTCCAAGAAAACGAGAATGAACACCACCAACACCACTCTCTGCCCAGAACCAAGTTCACCCTCTTCGGTTTACCTTCCGCCTCTTCTGGACTCTTCTCCCTACACCACGACAACCCCAGTAAGCTTCGCCGACCGTAACAACTGTTCCTACGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATTGCTGCAGCCACCGCTGCTGTTGTCTCCCCCAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGCCTCTGGGAGCGGATCCCTTCGCTAGGTTTCAGAGAAACGTCGGTGTCTCCGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTCCAGTTACCGTTCTTTTTTCCTCCGGCAGCACAGCCCTTCTCCGGCGGTACCTCCGGTGATCTCCTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTTGATGCGGCCCACAACGTTCCACTGGGTGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1056 0.5152 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTNGGSAMSASSGSKKTRMNTTNTTLCPEPSSPSSVYLPPLLDSSPYTTTTPVSFADRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQPLGADPFARFQRNVGVSAFPSLRSLQDNLQLPFFFPPAAQPFSGGTSGDLLWPMPEEQRLVDAAHNVPLGVSELDCMWGY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02582 351 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Viun5g02582 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Viun5g02582 351 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Viun5g02582 351 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Viun5g02582 351 MobiDBLite consensus disorder prediction 171 203 - -
Viun5g02582 351 FunFam NAC domain-containing protein 100-like 24 171 - -
Viun5g02582 351 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02582 Viun-Chr5 36963430 36966174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02582 1 351 NAC Transcription Factor Family AT5G53950 52.926 7.67e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g02582 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02582 - - vun:114185732 671.389