Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02580 ATGAAACGTTCCCGCAGAGGCAATGGCGACGGCGATGGCGGCGGCGACGCCGTGGGAGGTGGGAAAAATAAAACAAGTGAGCAAGCAGAAGCTCACCACTCGCATGGTCACACGCTCCCAGCTTCTCAAACTCAAGAATCTCATCAACGCACCGCCGCGGACGGCCGCGAAGACCTCGACGAAGCCGCGATAGACGGCAAGACGTTCGATGACCTCGGCCTGGCGGACTGGGTGGTTAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGTTGCATACCGCCTGTGCTAGAGGGTCGGCACGTGCTTGGCATCGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCGATCTTGCATCGACTCGCTGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACGCCCACGCGCGAACTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATGCGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATCGCTACACCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTGCTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAACTCGACAAAATCTGTTCTTTTCTGCGACCACTACTAGTACTCTGCAAAAGTTGCGAGAACGTTACCAAGATAAGATGTATGTCTACGAGGCATATGAAGGTTTTAAAACAGTTGAATCACTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAAGATGTATATTTGATGCATATCTTGTCAAAAATGGAGGATATGGGAATTCGGTCTGCCATCGTGTTTATCTCAACATGCAGAGACTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCATTCAAATCACAAACTCAGAGGCTTGAAGCTCTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTCCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGTGTTGGTCGAACGGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTTACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAACAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAACCAGAAACTGAAAATGCTTGCAGAGAAGGGACTATTGAAGAAAAATAAAAGGAGAAAAAAAAGTAAAGAATTTTCAGAGCAAGGGAAAGAGGTTTTCGGTGCTAAGAGTGTCGAGGAAATGAAGATGGGTGAGGATAGCATCGAGAGGGAAACAAAAACTAAAAGTGCTAAAAGAAAACGGTTTGTTAATGAAAAAAAAGTTAAATCAAAAGAAGTAAAGAATTTCACAGGGGGAGGAAAAAAACAGAAACAAAAAAGCAGAGGCATCAGCTGA 1701 0.4697 MKRSRRGNGDGDGGGDAVGGGKNKTSEQAEAHHSHGHTLPASQTQESHQRTAADGREDLDEAAIDGKTFDDLGLADWVVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDALKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPETRQNLFFSATTTSTLQKLRERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKNQKLKMLAEKGLLKKNKRRKKSKEFSEQGKEVFGAKSVEEMKMGEDSIERETKTKSAKRKRFVNEKKVKSKEVKNFTGGGKKQKQKSRGIS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02580 566 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 24 561 - -
Viun5g02580 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 426 IPR027417 -
Viun5g02580 566 CDD SF2_C_DEAD 283 415 - -
Viun5g02580 566 MobiDBLite consensus disorder prediction 1 54 - -
Viun5g02580 566 MobiDBLite consensus disorder prediction 518 533 - -
Viun5g02580 566 SMART helicmild6 325 406 IPR001650 -
Viun5g02580 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 271 IPR014001 -
Viun5g02580 566 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Viun5g02580 566 Pfam Helicase conserved C-terminal domain 310 406 IPR001650 -
Viun5g02580 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Viun5g02580 566 SMART ultradead3 86 286 IPR014001 -
Viun5g02580 566 Gene3D - 277 463 IPR027417 -
Viun5g02580 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 217 225 IPR000629 -
Viun5g02580 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 445 IPR001650 -
Viun5g02580 566 MobiDBLite consensus disorder prediction 518 566 - -
Viun5g02580 566 Gene3D - 17 271 IPR027417 -
Viun5g02580 566 CDD DEADc_DDX49 69 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02580 Viun-Chr5 36929521 36939874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02580 67 419 Eukaryotic Initiation Factors Gene Family AT3G13920 32.578 1.31e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02580 K14778 - gmx:100798597 771.541