Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02556 ATGGATCAAACAACGGATTCAGAAATGGATCAACAGAGACGAGGCTATCATCATTCTGAACCCTGTATCCTTACTAGAGGAGCCACAAACATCTCGCAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTCTGCCAGATGCTTATGACAATGCTAGGGTGTATGGTGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGATATGGGTGTGCCAGCGGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGAGTTTTCCCTCTGCCTCTAAATCACAGAGCTTCTGATCAGTTGCCTGGGTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCTGATAATTTTGGAAGAAGTTCTGGTTTCATTGATGATGTTAGAGGTCCCTACAAAAGGAAAATCGCTGAAGGGATGAGAGGAAATTATCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACGCACTACTGATGGCGTTGCTATGATGGATGGTGCACCATTTTCATTCCGCATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGGCAGGTGAGTCTATCATGGTTCATGACCATAATCATTTGATTCATGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCGTGGTTGGACCAGCAGTTGAACGGTAATAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGCACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGTTTGCAGAGATATCATGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCACCCAGCAATGCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTCACCCTGCAGTAACTGCAGCATCATTCAGAGTTCCAATAAACCCTTCACGCGGTGTTGCTATTCCAGCGCAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCATCACCCGGCCTCCGGATTTATCGACCTCATAGAGGGATTGTGCCTGAGACAGCTCTTGGACACCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGATCATCACAGAGATATGCGCCTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTTAGCACCGGTTTATCAGAGGAAACAATTACAAATCAGTTGAAAACAAAATCCTATTCCTCAATTGCTACTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGAATGCTTAAAGAAATGGTTGGTTGTGAAGAATGTCTGCCCAATATGCAAATCAGAGGCTTTGACTCCTGGAAGGAAGGATGTATAG 1587 0.4417 MDQTTDSEMDQQRRGYHHSEPCILTRGATNISQPNNMHAMVRASGNTTNVDSHFLPDAYDNARVYGVTQYNGIQHPHNLDMGVPAAANLYYSGINPSSGAGVFPLPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGFIDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARRTTDGVAMMDGAPFSFRIPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQLNGNNNDGHTTPWNQSLPMPYVQAPTVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPAMPMQGVRGHNINFHPAVTAASFRVPINPSRGVAIPAQPGFELGPRHVGPAPSPGLRIYRPHRGIVPETALGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITNQLKTKSYSSIATGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHAECLKKWLVVKNVCPICKSEALTPGRKDV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02556 528 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g02556 528 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g02556 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 521 IPR013083 -
Viun5g02556 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 141 521 IPR045191 GO:0061630
Viun5g02556 528 Pfam Ring finger domain 474 517 IPR001841 -
Viun5g02556 528 CDD RING-H2_RNF24-like 474 520 - -
Viun5g02556 528 SUPERFAMILY RING/U-box 469 521 - -
Viun5g02556 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Viun5g02556 528 SMART ring_2 476 516 IPR001841 -
Viun5g02556 528 FunFam E3 ubiquitin ligase BIG BROTHER 436 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02556 Viun-Chr5 36630038 36633988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02556 393 521 C3H Transcription Factor Family AT2G15530 47.407 1.48e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02556 K19041 - gmx:100800642 806.594