Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02551 ATGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGATATTGTACTTTCCTTTGAATGGTACAACGTTAACATTATATACGATGATACCGATTCTTCATCCACAAGAATGTTCTCTCATCTCTATAGAGATCTAAGTGTGGCAGGTGTTCTTATAAGCAATGTTTTGACCATCCCTCCGTTAAGCTCATCTTCACTGTCTCAAGAACTGGAGAAGCTTAGGGATGGTTATTGCAGAGTTTTTATTGTTAATTTGTCACTTCCTTTGGCCATAAACCTGTTTCTAACTGCAAAGGAATTGAGAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAGTCTTGTCCATTCCTTGAACTCTTCCATTATATCCTCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTCTACTTCAAATTTAGAAAAAAGTTTAGCTCAGAGAACCCTCATGAGCTTAATAATGAACCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTTGCTCTATCCATGATCACAGCAAACAAAAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCAGTGACCAAAGGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAGGATGACAAGGAAATTGGGTTCTGGACACATGAACTGGGGTTCTCAAATATTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGACCCTTCCATCATCAGATAACCCACTAAGAATTGGGGTCTCCGTTTTGGGCACATTGAAACAATTCATAACTGTAAATCAGGACCAAACAGAAAATACCACCACTTTCCATGGATTCACCATTGATCTTTTTAGAGCAACTATGGAGTTGCTGCCCTATCCCTTTCCCTACAAATTCTATCCTTTCAATGACACATACGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGACCATAATTTCATATCGATATCAGTATACAGAATTCACTCAGCCGTACACTGATCCGGGAGTGGTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGCTTGGTTATTTTTGAAACCTTTTACAAAGAGTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTTATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCGTGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGCTTGGTTATTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTCAACCAACTGTAGATGATATTGATCAGCTACGGAATAGAAACATCAGGGTTGGATACAGTTCAGGATCCTTTCTGATGAATTATGTGCAGGAAGTGTTACAGTTCCACCCTGAAAGCATGAGGAACTATGGAGAACTTGAAGAGTATGCTGAAGCTCTCAGAAGGAAAGAAATAGGAGCTGCCTTTCTTGAAGTTCCTGCAGCCAAAATTTTCGTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAATTGGAGGATTTGGATTTGCATTCGCAAGGGGGTCTCCATTTATTCCTGATGTAAACAAAGCACTTCTAGATTTAGTAGAAACAGGGAAGGTGCATGAATTAGAGAACAAAATGCTTGCATCAGAGGAATGTGAAGACACAGAAGTAAATGGAGAAACTGCAAGTCTCAGCCCGAACAGCTTCTGGGTCCTCTTCATATTCACAGCAGGCACATCAACATTTTCTCTCTTTGTTTACGTTTTCCGTATGAATTATGCAAACGGTGAAGAGAAAACAATCCAGAGACTAACCACAATGATCATTCAACAATGTAAAAATGCAAAGAGAAGAATGTCAAGAAAAGTAAGTGATGTTGCAGAAAGTCCTACCACCTCTTCAACTACACATGCTACACCAACCCAAATTTAA 2250 0.3991 MTPVLSLADATPNWSTLKWPYLVQISPNQFKQMKAVADIVLSFEWYNVNIIYDDTDSSSTRMFSHLYRDLSVAGVLISNVLTIPPLSSSSLSQELEKLRDGYCRVFIVNLSLPLAINLFLTAKELRMMEKGYVWIVTDPLTSLVHSLNSSIISSMQGIVGVKSYFPEIGLQYEDFYFKFRKKFSSENPHELNNEPGIFAARAYDAAWTLALSMITANKKKDQTLLDKILLNNFTGLSGKIHFSDQRLDPSDTFQIINVMGKDDKEIGFWTHELGFSNIIGQNAAFNSSMKELGQVLWPGRPWGTPRGWTLPSSDNPLRIGVSVLGTLKQFITVNQDQTENTTTFHGFTIDLFRATMELLPYPFPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYTEFTQPYTDPGVVMVVPLKSKVDHRAWLFLKPFTKSMWVLILAMVIYNGFILWMLERRHSPEITGSVLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVAWLFVALIITQTYTANLASMLTAERLQPTVDDIDQLRNRNIRVGYSSGSFLMNYVQEVLQFHPESMRNYGELEEYAEALRRKEIGAAFLEVPAAKIFVAKYCKEFIQAGPLYKIGGFGFAFARGSPFIPDVNKALLDLVETGKVHELENKMLASEECEDTEVNGETASLSPNSFWVLFIFTAGTSTFSLFVYVFRMNYANGEEKTIQRLTTMIIQQCKNAKRRMSRKVSDVAESPTTSSTTHATPTQI 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02551 749 CDD GluR_Plant 315 653 - -
Viun5g02551 749 FunFam Glutamate receptor 32 193 - -
Viun5g02551 749 Pfam Bacterial extracellular solute-binding proteins, family 3 341 651 IPR001638 -
Viun5g02551 749 Gene3D - 425 570 - -
Viun5g02551 749 Gene3D - 203 316 - -
Viun5g02551 749 SUPERFAMILY Periplasmic binding protein-like I 2 308 IPR028082 -
Viun5g02551 749 SMART GluR_14 318 655 IPR001320 GO:0015276|GO:0016020
Viun5g02551 749 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 718 IPR015683 -
Viun5g02551 749 FunFam Glutamate receptor 427 565 - -
Viun5g02551 749 FunFam Glutamate receptor 312 426 - -
Viun5g02551 749 Pfam Receptor family ligand binding region 18 258 IPR001828 -
Viun5g02551 749 SUPERFAMILY Periplasmic binding protein-like II 294 651 - -
Viun5g02551 749 Pfam Ligand-gated ion channel 652 684 IPR001320 GO:0015276|GO:0016020
Viun5g02551 749 Gene3D - 30 188 - -
Viun5g02551 749 MobiDBLite consensus disorder prediction 725 749 - -
Viun5g02551 749 Gene3D - 317 424 - -
Viun5g02551 749 MobiDBLite consensus disorder prediction 731 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02551 Viun-Chr5 36546719 36550226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02551 3 710 Ion Channels AT5G27100 32.091 1.16e-122 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02551 - - gmx:100799573 1192.95