Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02550 ATGGTGTTTGGTATTATGGGTAGCTTGCACGTGCTTGTTCTTCTTCTTTGTTTGATGAGCACTGCATTAGGAAAAACAACTGTTGATGATGGCATGCATGTGAAGATGAAGGGTACCATAGGAGTTATTGCAGACAACAACTCTCGTAACGGTAAAGAGGAGATAGTAGCTGTTAAGATGGCAATGGAAGATTTCTATCATTATAGCAATCAAAGTTTTGGTTTACAGATAAGGGACTCACATGCTGATCCTCTTCAGGCTGCTCTAGCAGCTAGAGATCTTATTGATACACACAAAGTGGAAGCAATTATAGGACCTGAAACATGGAAAGTGACAACCTTAGTGGCTGAAATTTGTAGCCAAAACATGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGATATTGTACTTTCCTTTGAATGGTACAACGTTAACATTATATACGATGATACCGATTCTTCATCCACAAGAATGTTCTCTCATCTCTATAGAGATCTAAGTGTGGCAGGTGTTCTTATAAGCAATGTTTTGACCATCCCTCCGTTAAGCTCATCTTCACTGTCTCAAGAACTGGAGAAGCTTAGGGATGGTTATTGCAGAGTTTTTATTGTTAATTTGTCACTTCCTTTGGCCATAAACCTGTTTCTAACTGCAAAGGAATTGAGAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAGTCTTGTCCATTCCTTGAACTCTTCCATTATATCCTCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTCTACTTCAAATTTAGAAAAAAGTTTAGCTCAGAGAACCCTCATGAGCTTAATAATGAACCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTTGCTCTATCCATGATCACAGCAAACAAAAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCAGTGACCAAAGGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAGGATGACAAGGAAATTGGGTTCTGGACACATGAACTGGGGTTCTCAAATATTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGACCCTTCCATCATCAGATAACCCACTAAGAATTGGGGTCTCCGTTTTGGGCACATTGAAACAATTCATAACTGTAAATCAGGACCAAACAGAAAATACCACCACTTTCCATGGATTCACCATTGATCTTTTTAGAGCAACTATGGAGTTGCTGCCCTATCCCTTTCCCTACAAATTCTATCCTTTCAATGACACATACGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGACCATAATTTCATATCGATATCAGTATACAGAATTCACTCAGCCGTACACTGATCCGGGAGTGGTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGCTTGGTTATTTTTGAAACCTTTTACAAAGAGTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTTATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCGTGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGCTTGGTTATTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTCAACCAACTGTAGATGATATTGATCAGCTACGGAATAGAAACATCAGGGTTGGATACAGTTCAGGATCCTTTCTGATGAATTATGTGCAGGAAGTGTTACAGTTCCACCCTGAAAGCATGAGGAACTATGGAGAACTTGAAGAGTATGCTGAAGCTCTCAGAAGGAAAGAAATAGGAGCTGCCTTTCTTGAAGTTCCTGCAGCCAAAATTTTCGTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAATTGGAGGATTTGGATTTGCATTCGCAAGGGGGTCTCCATTTATTCCTGATGTAAACAAAGCACTTCTAGATTTAGTAGAAACAGGGAAGGTGCATGAATTAGAGAACAAAATGCTTGCATCAGAGGAATGTGAAGACACAGAAGTAAATGGAGAAACTGCAAGTCTCAGCCCGAACAGCTTCTGGGTCCTCTTCATATTCACAGCAGGCACATCAACATTTTCTCTCTTTGTTTACGTTTTCCGTATGAATTATGCAAACGGTGAAGAGAAAACAATCCAGAGACTAACCACAATGATCATTCAACAATGTAAAAATGCAAAGAGAAGAATGTCAAGAAAAGTAAGTGATGTTGCAGAAAGTCCTACCACCTCTTCAACTACACATGCTACACCAACCCAAATTTAA 2616 0.3995 MVFGIMGSLHVLVLLLCLMSTALGKTTVDDGMHVKMKGTIGVIADNNSRNGKEEIVAVKMAMEDFYHYSNQSFGLQIRDSHADPLQAALAARDLIDTHKVEAIIGPETWKVTTLVAEICSQNMTPVLSLADATPNWSTLKWPYLVQISPNQFKQMKAVADIVLSFEWYNVNIIYDDTDSSSTRMFSHLYRDLSVAGVLISNVLTIPPLSSSSLSQELEKLRDGYCRVFIVNLSLPLAINLFLTAKELRMMEKGYVWIVTDPLTSLVHSLNSSIISSMQGIVGVKSYFPEIGLQYEDFYFKFRKKFSSENPHELNNEPGIFAARAYDAAWTLALSMITANKKKDQTLLDKILLNNFTGLSGKIHFSDQRLDPSDTFQIINVMGKDDKEIGFWTHELGFSNIIGQNAAFNSSMKELGQVLWPGRPWGTPRGWTLPSSDNPLRIGVSVLGTLKQFITVNQDQTENTTTFHGFTIDLFRATMELLPYPFPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYTEFTQPYTDPGVVMVVPLKSKVDHRAWLFLKPFTKSMWVLILAMVIYNGFILWMLERRHSPEITGSVLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVAWLFVALIITQTYTANLASMLTAERLQPTVDDIDQLRNRNIRVGYSSGSFLMNYVQEVLQFHPESMRNYGELEEYAEALRRKEIGAAFLEVPAAKIFVAKYCKEFIQAGPLYKIGGFGFAFARGSPFIPDVNKALLDLVETGKVHELENKMLASEECEDTEVNGETASLSPNSFWVLFIFTAGTSTFSLFVYVFRMNYANGEEKTIQRLTTMIIQQCKNAKRRMSRKVSDVAESPTTSSTTHATPTQI 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02550 871 Gene3D - 46 373 - -
Viun5g02550 871 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 840 IPR015683 -
Viun5g02550 871 MobiDBLite consensus disorder prediction 853 871 - -
Viun5g02550 871 FunFam Glutamate receptor 434 548 - -
Viun5g02550 871 Pfam Receptor family ligand binding region 57 380 IPR001828 -
Viun5g02550 871 MobiDBLite consensus disorder prediction 847 871 - -
Viun5g02550 871 PIRSF IGluLR_plant 5 870 IPR017103 -
Viun5g02550 871 Gene3D - 150 393 - -
Viun5g02550 871 FunFam Glutamate receptor 549 687 - -
Viun5g02550 871 Pfam Ligand-gated ion channel 774 806 IPR001320 GO:0015276|GO:0016020
Viun5g02550 871 Pfam Bacterial extracellular solute-binding proteins, family 3 463 773 IPR001638 -
Viun5g02550 871 SMART GluR_14 440 777 IPR001320 GO:0015276|GO:0016020
Viun5g02550 871 CDD GluR_Plant 437 775 - -
Viun5g02550 871 CDD PBP1_GABAb_receptor_plant 40 399 IPR044440 -
Viun5g02550 871 SUPERFAMILY Periplasmic binding protein-like II 416 773 - -
Viun5g02550 871 Gene3D - 436 546 - -
Viun5g02550 871 SUPERFAMILY Periplasmic binding protein-like I 39 430 IPR028082 -
Viun5g02550 871 Gene3D - 547 692 - -
Viun5g02550 871 FunFam Glutamate receptor 154 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02550 Viun-Chr5 36546557 36550226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02550 9 835 Ion Channels AT2G29110 31.609 1.60e-135 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02550 - - vra:106760680 1299.65