Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02549 ATGGATAGCTTGCAAGTGCTTGTTCCTCTTCTTTGTTTGATGAGCACTGCATTAGGAAAAACAACTGTTGATGATGGCATGCATGTGAAGATGAAGGGTACCATAGGAGTTATTACAGACAACAACTCTCGGAACGGTAAAGAGGAGATAGTAGCTGTTAAGATGGCAATGGAAGATTTCTATCATTATAGCAATCAGAGTTTTGGTTTACAGATAAGGGACTCACATGCTGATCCTCTTCAGGCTGCTCTAGCAGCTAGAGATCTTATCGATACACAGAAAGTGGAAGCAATTATAGGACCTGAAACATGGAAAGAGACAACCTTAGTGGCTGATATTTGTAGCCAAAATATGACCCCAGTTATATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAAGTTGCCCTACCTTGTTCAAGTCTCACCTAATCAGTTTATGCAGATGAAAGCAGTAGCAGCTATTGTGCATTCCTTTGAATGGTACAACGTTAACATAATATACGATGATACCGATTCTTCATCCACAAGAATGTTCTCTCATCTCTACAGAGATTTCAGTGTGGCAGGTGTTCTTGTAAGCAATGTTTTGACCATCCCTCCGTTAACCTCCTCTTCTCTGTCTCAAGAACTGGAGAAGCTTAGGGATGGTTATTGCAGAGTTTTTATTGTTAATTTGTCACTTCCTTTGGCCATAAACCTGTTTCAAACTGCAAAGGAATTGAAAATGGTGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAGTCTTGTCCATTCCTTGAACTCTTCCATTATATCCTCAATGCAAGGGATAATTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTCTACTTCAAATTTAGAAAAAAGTTTAGCTCAGAGAACCCTCATGAGCTTAACAATGAACCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTTGCTCTATCCATGATCCAAGCAAACAACAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCAGTGACCAAAAGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAAGATTGTAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATATTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGACCCTTCCATCATCAGATAACCCACTAAGAATTGGGGTCTCCGTTTTGGGCACATTGAAACAATTCATAACTGTAATTCAGGACCAAACAGAAAATACCACCACCTTTCAAGGATTCACCATTGATCTGTTTAACGCAACTATGAAGTTGCTGCCCTATTATTTGCCCTACAAATTTTATCCTTTCAATGACACATACGATAATTTGGTGAAGCAAGTTTACTTAAAGAATTTTGATGCAGTAATTGATGTGGCCATAATTTCATATCGATATCAGTACGCAGAATTCACTCAGCCATACACTGATCCGGGAGTGGTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGCTTGGTTATTTTTTAAACCTTTTACAAAGAGTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTTATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCCTAACACAGACTTATACAGCTAACCTTGCCAGCATGCTAACTGCTGAACAGCTCGAACCAACTATAGATGATGTTGATCAGCTACGGAATAGAAATATCAAGGTTGGATACAGTTCAGGATCCTTCGTGAAACATTATGTGCAGGAAGTGTTACAGTTCCACCCTGAAAACATGAGGAATTATGGAGAACTTGAAGAGTTTGCTGAAGCTCTCAGAAGAAAAGAAATAGGATCTGCCTTTCTTGAAGTTCCTACAGCCAAAATTTTCGTATCAAAGTACTGTAATGAGTTTATTCAAGCCAGACCCTCGTACAAAATTGGAGGATTTGGATTTGCATTTCCAAGGGGGTCTCCATTTATTCCTGATGTAAACAAAGCACTTCTCGATTTAGTAGAAACCGGGAAGGTACGTGAATTAGAGAACAAAATGCTTGCATTAGAGGAATGTGAAGACACAGATGTAAATGGAGAAACTGCAAGCCTTAGCCCGAACAGCTTCTGGGTCCTCTTCATATTCACAGCAGGCACATCAACATTTTCTCTCTTGGTTTACATTTTCCGTACGAATTATGCAAACAGTGAAGAGAAAACAATCTGGAGACTAACCGCAATGATCATTCAACAGTGTAACCAGGCAAAGAGAAGAATATCAAGAAAAGTAAGTGATGTTGCAGAAAGTGTTGTTGCTCCACCAACTCAAGTTTAA 2583 0.3964 MDSLQVLVPLLCLMSTALGKTTVDDGMHVKMKGTIGVITDNNSRNGKEEIVAVKMAMEDFYHYSNQSFGLQIRDSHADPLQAALAARDLIDTQKVEAIIGPETWKETTLVADICSQNMTPVISLADATPNWSTLKLPYLVQVSPNQFMQMKAVAAIVHSFEWYNVNIIYDDTDSSSTRMFSHLYRDFSVAGVLVSNVLTIPPLTSSSLSQELEKLRDGYCRVFIVNLSLPLAINLFQTAKELKMVEKGYVWIVTDPLTSLVHSLNSSIISSMQGIIGVKSYFPEIGLQYEDFYFKFRKKFSSENPHELNNEPGIFAARAYDAAWTLALSMIQANNKKDQTLLDKILLNNFTGLSGKIHFSDQKLDPSDTFQIINVMGKDCKEIGFWTNGLGFSNIIGQNAAFNSSMKELGQVLWPGRPWGTPRGWTLPSSDNPLRIGVSVLGTLKQFITVIQDQTENTTTFQGFTIDLFNATMKLLPYYLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVAIISYRYQYAEFTQPYTDPGVVMVVPLKSKVDHRAWLFFKPFTKSMWVLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALILTQTYTANLASMLTAEQLEPTIDDVDQLRNRNIKVGYSSGSFVKHYVQEVLQFHPENMRNYGELEEFAEALRRKEIGSAFLEVPTAKIFVSKYCNEFIQARPSYKIGGFGFAFPRGSPFIPDVNKALLDLVETGKVRELENKMLALEECEDTDVNGETASLSPNSFWVLFIFTAGTSTFSLLVYIFRTNYANSEEKTIWRLTAMIIQQCNQAKRRISRKVSDVAESVVAPPTQV 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02549 860 PIRSF IGluLR_plant 2 856 IPR017103 -
Viun5g02549 860 SUPERFAMILY Periplasmic binding protein-like I 34 425 IPR028082 -
Viun5g02549 860 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 818 IPR015683 -
Viun5g02549 860 CDD GluR_Plant 432 770 - -
Viun5g02549 860 Gene3D - 429 543 - -
Viun5g02549 860 Pfam Receptor family ligand binding region 52 375 IPR001828 -
Viun5g02549 860 Gene3D - 145 387 - -
Viun5g02549 860 Gene3D - 544 686 - -
Viun5g02549 860 SUPERFAMILY Periplasmic binding protein-like II 411 768 - -
Viun5g02549 860 Pfam Ligand-gated ion channel 769 801 IPR001320 GO:0015276|GO:0016020
Viun5g02549 860 CDD PBP1_GABAb_receptor_plant 35 394 IPR044440 -
Viun5g02549 860 SMART GluR_14 435 772 IPR001320 GO:0015276|GO:0016020
Viun5g02549 860 FunFam Glutamate receptor 544 682 - -
Viun5g02549 860 FunFam Glutamate receptor 429 543 - -
Viun5g02549 860 Pfam Bacterial extracellular solute-binding proteins, family 3 458 768 IPR001638 -
Viun5g02549 860 FunFam Glutamate receptor 149 310 - -
Viun5g02549 860 Gene3D - 41 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02549 Viun-Chr5 36496369 36511857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02549 4 859 Ion Channels AT2G29110 31.737 2.00e-143 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02549 - - vra:106760680 1330.85