Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02548 ATGGGTAGCTTGCATGTGCTTGTTCCTCTTCTTTGTTTGATGAGCACTGCATTAGGAAAAACAACTGTTGATGATGGCATGCATGTGGAGATGAAGGGTACCATAGGAGTTATTGCAGACAACAACTCTCGTAATGGTAAAGAGGAGATAGTAGCTGTTAAGATGGCAATGGAAGATTTCTATCATTATAGCAATCAAAGTTTTGGTTTACAGATAAGGGACTCACATGCTGATCCTCTTCAGGCTGCTCTAGCAGCTAGAGATCTGATTGATACACAGAAAGTGGAAGCAATAATAGGACCTGAAACATGGAAAGAGACAACCTTAGTGGCTGATATTTGTAGCCAAAACATGACCCCTGTTCTATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATCTCACCTAATCAATTTAAGCAGATGAAAGCAGTAGCAGCTATTTTACATTCCTTTGAATGGTACAACGTTAACATAATATACGATGATACCGATTCTTCATCCACAAGAATGTTCTCTCATCTCTATAGAGATCTTAATGTAGCAGGTGTTCATATAAGCCATGTTTTGGCCATCCCTCCGTTAAGCTCATCTGCACTGTCTCAAGAACTAGAGAATCTTAGGGATGGTCATTGCAGAGTTTTTGTTGTTAATTTGTCACTTCCTTTGGCCATAAACCTGTTTAAAACTGCAAAGGAATTGGGAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAGTCTTGTCCATTCCTTGAACTCTTCCATTATATCCTCAATGCAAGGGATAGTTGGAATAAAGAGCTACTTCCCAGAAATAGGGCTTCAATATGAGGACTTCTACCCTAAATTTAGAAAAAGGTTTAGCTCAGAGAATCCTCATGAGCTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTTGCTCTATCCATGATCCAAACAAACAACAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCAGTGACCAAAAGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAAGATTGTAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATATTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGATTAAAGCATTGGATAAACCACTAAGAATTGGGGTCCCCGTTTTGGCAACATTGAAACAATTCATAAATGTAATTCAAGACCAAACAGAAAATACCACCACTTTCCAGGGATTCACCATTGATCTTTTTAGAGCAACTATGGAGTTGCTGCCCTATCACTTGCCCTACAAATTCTATCCATTCAATGACACATATGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGACCATAATTTCATATCGATATCAGTATGCAGAATTCACTCAGCCATACACTGATCCGGGAGTGGTGATGGTAGTGCCCCTTAAATCACAAGTGGATCATAGAGCTTGGTTGTTTATGAAACCTTTTACAAAGACTATGTGGGTTCTGATACTGGCCATGGTTATCTACAATGGCTTTATTCTGTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGTTACATAGCAATTTATCAAAGATGGTTATGGTGGTGTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACGGTTCAGGATCCTTTCTGAAACACTATGTGAATGAAGTGTTACATTTTCACCCTGAAAACATGAGGAACTATGGTGAACTTGAAGAGTATGCTGAAGCTCTCAGAAGAAAAGAAATAGGAGCTGCCTTTCTTGAAGTTCCTGCAGCCAAAATTTTCCTAGCCAAGTACTGTAGAGAGTTTATTCAAGCCGGGCCTTCGTACAAAATTGGAGGATTTGCATTTGCATTTCCAAGGGGGTCTCCATTTATTCCTGATGTAAACAAAGCACTTCTAGATTTAGTAGAAACCGGGAAGGTACGTGAATTAGAGAACAAAATGCTTGCATTAGAGGAATGTGAAGACACAGGTGTAAATGGAAAAACTGCAAGTCTTAGCCCGAACAGCTTCTGGGTCCTCTTCATATTCACAGCAGGCACATCAACATTTTCTCTCTTGGTTTACATTTTCCGTATTAATTATGCAAACAGTGAAGAGAAAACAATCTGGAAACTAACCACAATGATCATTCAACAATGTAATCATGCAAAGAGAAGAATGTCAAGAAAAGTAAGTGATGTTGCAGAAAGCCCTACGACCTCTTCAACCACACATGCTACACCAACTCAAGTTTAA 2598 0.3965 MGSLHVLVPLLCLMSTALGKTTVDDGMHVEMKGTIGVIADNNSRNGKEEIVAVKMAMEDFYHYSNQSFGLQIRDSHADPLQAALAARDLIDTQKVEAIIGPETWKETTLVADICSQNMTPVLSLADATPNWSTLKWPYLVQISPNQFKQMKAVAAILHSFEWYNVNIIYDDTDSSSTRMFSHLYRDLNVAGVHISHVLAIPPLSSSALSQELENLRDGHCRVFVVNLSLPLAINLFKTAKELGMMEKGYVWIVTDPLTSLVHSLNSSIISSMQGIVGIKSYFPEIGLQYEDFYPKFRKRFSSENPHELNNEPGIFAARAYDAAWTLALSMIQTNNKKDQTLLDKILLNNFTGLSGKIHFSDQKLDPSDTFQIINVMGKDCKEIGFWTNGLGFSNIIGQNAAFNSSMKELGQVLWPGRPWGTPRGWIKALDKPLRIGVPVLATLKQFINVIQDQTENTTTFQGFTIDLFRATMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSQVDHRAWLFMKPFTKTMWVLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTIDNIDQLRNSNIRVGYGSGSFLKHYVNEVLHFHPENMRNYGELEEYAEALRRKEIGAAFLEVPAAKIFLAKYCREFIQAGPSYKIGGFAFAFPRGSPFIPDVNKALLDLVETGKVRELENKMLALEECEDTGVNGKTASLSPNSFWVLFIFTAGTSTFSLLVYIFRINYANSEEKTIWKLTTMIIQQCNHAKRRMSRKVSDVAESPTTSSTTHATPTQV 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02548 865 Pfam Ligand-gated ion channel 768 800 IPR001320 GO:0015276|GO:0016020
Viun5g02548 865 Pfam Bacterial extracellular solute-binding proteins, family 3 457 767 IPR001638 -
Viun5g02548 865 SUPERFAMILY Periplasmic binding protein-like I 34 425 IPR028082 -
Viun5g02548 865 Gene3D - 41 368 - -
Viun5g02548 865 FunFam Glutamate receptor 543 681 - -
Viun5g02548 865 FunFam Glutamate receptor 428 542 - -
Viun5g02548 865 Pfam Receptor family ligand binding region 52 375 IPR001828 -
Viun5g02548 865 FunFam Glutamate receptor 149 310 - -
Viun5g02548 865 Gene3D - 145 387 - -
Viun5g02548 865 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 834 IPR015683 -
Viun5g02548 865 MobiDBLite consensus disorder prediction 842 865 - -
Viun5g02548 865 Gene3D - 427 544 - -
Viun5g02548 865 SMART GluR_14 434 771 IPR001320 GO:0015276|GO:0016020
Viun5g02548 865 SUPERFAMILY Periplasmic binding protein-like II 416 767 - -
Viun5g02548 865 CDD PBP1_GABAb_receptor_plant 35 394 IPR044440 -
Viun5g02548 865 PIRSF IGluLR_plant 333 864 IPR017103 -
Viun5g02548 865 PIRSF IGluLR_plant 3 340 IPR017103 -
Viun5g02548 865 MobiDBLite consensus disorder prediction 847 865 - -
Viun5g02548 865 Gene3D - 545 683 - -
Viun5g02548 865 CDD GluR_Plant 431 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02548 Viun-Chr5 36473153 36477660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02548 4 829 Ion Channels AT2G29110 32.796 4.67e-143 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02548 - - vra:106760680 1379