Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02546 ATGTCGAAAACAAAGTCGAGTAAAAAAGCCTTGAAGTCCTACACCATCAAAGGTACCAACAAGATTGTAAGAGTTGGGGACCATGTGACGATGCGGCCCCCTGATACAAACAAGCCACCATACGTGGCTCGTATTGAGAAAATTGAACCAGCTGGTCGTAAGAACGATGTGAAGGTGTATGTTAGGTGGTACTATAGGCCAGAAGATTCCTTTGGGGGACGTAGGAGATTCCATGGAGTGAAAGAGTTGTTTTTGTCTGACCATTATGATGTACAAAGTGCTCATGCCATTGAAGAGAAGTGTGTTGTGCACTCTTTCAAGAACTATACCAAGCTTCAAGATGTAGCTGCTGAGGATTATTATTATAGGTTTGAGTACAAGGCTGCTAGTGGAACTTTCACACCTGATCGTGTAGTTGTGTACTGCAAGTGCGAGATGCCTTATAACCCAGATGTACTTATGATGCAGTGTGAGGAATGCAAGAATTGGTACCATCCTGCTTGTGTGGACATGACTACTGAAGATGCACAAAAGTTAGAGCAATATGTTTGCTCGGAATGTTCATAA 567 0.4286 MSKTKSSKKALKSYTIKGTNKIVRVGDHVTMRPPDTNKPPYVARIEKIEPAGRKNDVKVYVRWYYRPEDSFGGRRRFHGVKELFLSDHYDVQSAHAIEEKCVVHSFKNYTKLQDVAAEDYYYRFEYKAASGTFTPDRVVVYCKCEMPYNPDVLMMQCEECKNWYHPACVDMTTEDAQKLEQYVCSECS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02546 188 Pfam PHD-finger 141 188 IPR019787 -
Viun5g02546 188 PANTHER OS08G0421900 PROTEIN 1 188 - -
Viun5g02546 188 Pfam BAH domain 23 136 IPR001025 GO:0003682
Viun5g02546 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 188 IPR013083 -
Viun5g02546 188 ProSiteProfiles Zinc finger PHD-type profile. 139 188 IPR019787 -
Viun5g02546 188 SMART PHD_3 141 188 IPR001965 -
Viun5g02546 188 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Viun5g02546 188 SMART BAH_4 21 137 IPR001025 GO:0003682
Viun5g02546 188 SUPERFAMILY FYVE/PHD zinc finger 133 188 IPR011011 -
Viun5g02546 188 Gene3D - 1 133 IPR043151 -
Viun5g02546 188 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02546 Viun-Chr5 36433539 36436807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02546 30 133 Core DNA Replication Machinery Family AT4G14700 25.000 8.34e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun5g02546 BAH 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02546 K25868 - cit:102614676 308.916