Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02537 ATGGTGAGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGGAGATAGTGGAAGTTGAAGGAGGACACATTGTGCGGTCCACGGGGCGGAAGGATCGTCACAGCAAAGTCTGCACCGCCAAAGGGCCGCGTGACCGCCGGGTGAGGCTATCGGCCCACACCGCAATTCAATTCTACGACGTGCAGGATCGGTTGGGCTACGACCGCCCCAGTAAGGCCGTCGACTGGCTCATCAACAAAGCCAAGGCCGCCATAGACCAACTCGCGCATCTCCCTCCCTGGAAACCCACCCTCCCGACACCAAACCACCTAAACGACGACGAATCAGACAAAACAAACCCTAATAACCCAAACTCAACCACAAACCCTGATGCTGAAATTCTGAACCAGTTCAACGAGAATCTCGAGAACGATGGTGGAGGAGGAGGAGGAGGAGGAGGAGGTTCGAGTTATCTTCCGTTGGATAACGACGCGATAAGATCATTCTTCCCCACAACGACGTCGCCGTTGATTCAGTTCCAGAGCTACCCACCGGATTTGCTTTCGAGGACGAGCAGCCAGGATTTGCGTCTCTCGCTTCAGTCCTTGCAGGACCCGATTATGCTCCACCATAACCAAAACGAGCACGTGCTTTTCGCTGGAGCCGGGTTTGATAACATGGGAGCGTGGAACAACAGTGGGAATGCTACTAATGATACTCATGGTGCTGGAGGTGGGGGAGGGTTTGTGCTCAACGCTCCCTCGCCTTTGCCGGGGCCGGCAACGGTGGCGTCGCCGGCGATGGTTTTTGGCTATGGTAATGGGAATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCGTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTGGCCGCCGCCGATCATTATCATCGGCATCACTATTTGTCACCGGCGGCGGCTGCGGCGGCGTTGGTGTATCAGTCATCTCCTTCTTCGGCATTTGCGCCCGGGGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCACGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGCTGA 1098 0.5747 MVRGGGGGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKAAIDQLAHLPPWKPTLPTPNHLNDDESDKTNPNNPNSTTNPDAEILNQFNENLENDGGGGGGGGGGSSYLPLDNDAIRSFFPTTTSPLIQFQSYPPDLLSRTSSQDLRLSLQSLQDPIMLHHNQNEHVLFAGAGFDNMGAWNNSGNATNDTHGAGGGGGFVLNAPSPLPGPATVASPAMVFGYGNGNGQGQYFSQRGPLQSSNTPSVRAWIDAPSFVAAADHYHRHHYLSPAAAAAALVYQSSPSSAFAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02537 365 MobiDBLite consensus disorder prediction 90 124 - -
Viun5g02537 365 MobiDBLite consensus disorder prediction 23 44 - -
Viun5g02537 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 281 IPR005333 GO:0003700
Viun5g02537 365 MobiDBLite consensus disorder prediction 342 365 - -
Viun5g02537 365 Pfam TCP family transcription factor 28 112 IPR017887 -
Viun5g02537 365 MobiDBLite consensus disorder prediction 340 365 - -
Viun5g02537 365 ProSiteProfiles TCP domain profile. 29 87 IPR017887 -
Viun5g02537 365 MobiDBLite consensus disorder prediction 110 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02537 Viun-Chr5 36280355 36282710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02537 9 364 TCP Transcription Factor Family AT1G53230 45.980 2.46e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun5g02537 TCP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02537 - - vum:124829805 579.326