Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02533 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCTTCCGTTTTCCAGAGAGGTCGTTATTCCCATCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAACAAAGAAAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGCGCCTCAACGGCGAAATTGTCAGTGCAGACTCCGTCCAGGTGTATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTCTCCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAAAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGTGATTCAAAGGCTCAATTTCTAGCAGCAAATGATTGGTATCGATTACGACGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTACTGAGGATTCTGAGTCATCTGATATGAACACGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATGCGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCGTCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAAGATATACCAGTGGCTTGATGGTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGGCGCATACCATGACTGGAATGGAAGTCTTCGTGTGCCTGAACACTTAAGAATGTCGAGAGCTATTTCTAATCGCCGAGAAGAAACACAAATAAAGTCTTACCGCACCAGAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTTAACTGGATAAGCAAGACTCAAAGGTGA 1215 0.4428 MINNGVCTLRTCFRFPERSLFPSLQRSFTFRRRFLVTASQRKNKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPVITSEVNQELAELQRNEDWDTAVQLVVKAGDSKAQFLAANDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGECSVTEDSESSDMNTDGILSEAQWLLDAGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASRNFAKRQLTWFRNEKIYQWLDGSKPLETILSFINGAYHDWNGSLRVPEHLRMSRAISNRREETQIKSYRTRNRHFVKGEDCSHILNWISKTQR 404
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02533 404 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 330 IPR039657 -
Viun5g02533 404 Pfam IPP transferase 80 325 - -
Viun5g02533 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Viun5g02533 404 Hamap tRNA dimethylallyltransferase [miaA]. 47 342 IPR018022 GO:0008033
Viun5g02533 404 Gene3D - 156 225 - -
Viun5g02533 404 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Viun5g02533 404 Gene3D - 44 393 IPR027417 -
Viun5g02533 404 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Viun5g02533 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 311 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun5g02533 Viun-Chr5 36147037 36153369 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02533 50 224 C2H2 Transcription Factor Family AT2G27760 28.962 3.07e-19 87.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02533 K00791 - gmx:100808814 694.886