Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02532 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCTTCCGTTTTCCAGAGAGGTCGTTATTCCCATCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAACAAAGAAAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGCGCCTCAACGGCGAAATTGTCAGTGCAGACTCCGTCCAGGTGTATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTCTCCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAAAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGTGATTCAAAGGCTCAATTTCTAGCAGCAAATGATTGGTATCGATTACGACGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTACTGAGGATTCTGAGTCATCTGATATGAACACGTACGGTGATGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATGCGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCGTCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAAGATATACCAGTGGCTTGATGGTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGGCGCATACCATGACTGGAATGGAAGTCTTCGTGTGCCTGAACACTTAAGAATGTCGAGAGCTATTTCTAATCGCCGAGAAGAAACACAAATAAAGTCTTACCGCACCAGAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTTAACTGGATAAGCAAGACTCAAAGGTGA 1347 0.4358 MINNGVCTLRTCFRFPERSLFPSLQRSFTFRRRFLVTASQRKNKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPVITSEVNQELAELQRNEDWDTAVQLVVKAGDSKAQFLAANDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGECSVTEDSESSDMNTYGDGMEETSSSELDYEFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDAGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASRNFAKRQLTWFRNEKIYQWLDGSKPLETILSFINGAYHDWNGSLRVPEHLRMSRAISNRREETQIKSYRTRNRHFVKGEDCSHILNWISKTQR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02532 448 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Viun5g02532 448 Gene3D - 44 437 IPR027417 -
Viun5g02532 448 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Viun5g02532 448 Pfam IPP transferase 80 369 - -
Viun5g02532 448 MobiDBLite consensus disorder prediction 236 255 - -
Viun5g02532 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 374 IPR039657 -
Viun5g02532 448 MobiDBLite consensus disorder prediction 241 255 - -
Viun5g02532 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Viun5g02532 448 Gene3D - 156 226 - -
Viun5g02532 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02532 Viun-Chr5 36147037 36153369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02532 50 224 C2H2 Transcription Factor Family AT2G27760 28.962 4.87e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02532 K00791 - gmx:100808814 802.357