Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02496 ATGTCGCTGAGAAAGGTCTTTCGCTCCCGCAAGTTCTCGAGATCGTTCAAGGAGGCGCCGGCGGTGGGGACCGTCGAGGGCGGGGTAACCGGAAACGGGCTTGAAAACGCGCACGAAGATGGGTGGTCGAATATGCTGCCGGAGATCCTCTGCGAGATCGTGCGCCGCGTCGACGCCGCCGACGAGCAGTGGCCAAACCGCCAGAACGTAGTGTCGTGCGCTTGCGTGTGCAAGCGCTGGCGCGACATCACGCGTGAGGTCGTGCGTGAGCCTTTGCACACCGGAAAAATCACTTTCCCTTCGTGTCTTAAACAGCCCGGACCACGTGAGGTTCCCCACCAGTGTCTTATAAAGCGGAACAAGAAAACCTCAACGTTTTATCTATATCTTGCTCTAACACCATCATTCACAGATAAAGGGAAGTTTCTGCTTGCAGCTAGGAGATATAGGTGTGGTACCCATACCGAGTATATAATTTCTCTCGATGCTGATGATTTATCGCAAGGAAGCAATGCTTATGTTGGAAAATTAAGCTCGGATTTTCTTGGCACGAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGTCGGCGGTTTGCCAGCAAGCAGATAAGCCCCCAGGTCCCTGCTGGTAACTTTGAGGTGGGGCAGGTGTCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCTTTGAAGTCTCCCATGACTCCTGTGAAACCTACAGGTGAAACTTCAGATAGCACATCTCTTGATGGCCACAAGATGCACGATAAAGAACACTTTGCTTCGGGCCACACAATCTTGAAGAATAAAGCTCCCAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCCTCGGTGAAAAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGGAAAGGGGATGAGGAAACAGTTCTTCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCTTTCCAGGCTTTTGCTATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1125 0.5049 MSLRKVFRSRKFSRSFKEAPAVGTVEGGVTGNGLENAHEDGWSNMLPEILCEIVRRVDAADEQWPNRQNVVSCACVCKRWRDITREVVREPLHTGKITFPSCLKQPGPREVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPMTPVKPTGETSDSTSLDGHKMHDKEHFASGHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02496 374 Pfam Tub family 103 369 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Viun5g02496 374 PRINTS Tubby superfamily signature 284 301 IPR000007 -
Viun5g02496 374 PANTHER TUBBY-RELATED 38 372 - -
Viun5g02496 374 ProSitePatterns Tub family signature 1. 302 315 IPR018066 -
Viun5g02496 374 SUPERFAMILY F-box domain 35 85 IPR036047 GO:0005515
Viun5g02496 374 SUPERFAMILY Tubby C-terminal domain-like 93 374 IPR025659 -
Viun5g02496 374 ProSitePatterns Tub family signature 2. 359 374 IPR018066 -
Viun5g02496 374 Gene3D Tubby Protein; Chain A 98 374 IPR025659 -
Viun5g02496 374 MobiDBLite consensus disorder prediction 246 268 - -
Viun5g02496 374 Gene3D - 36 88 - -
Viun5g02496 374 Pfam F-box domain 42 87 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02496 Viun-Chr5 35619779 35624524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02496 1 374 TUB Transcription Factor Family AT1G53320 72.032 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun5g02496 Tub 2.2e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02496 K19600 - gmx:100808096 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02496 5 35619779 35624524 Viun5g02496 5 35619779 35624524 ECH