Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02480 ATGAAGAGGAACAATTTCATGAAAGACTATGCCAACAATAACCCATCATCAAAAGACTTCACCCATGTTGTCAACTGCTACAAAAACCACAACCAGATGGCTAAAGAGTTGTGCAATGCAGATCAGGACTATGTCAATGGCTTCCCATGGCCTCCAAGATCATACACTTGTAGCTTCTGCAGGAAGGAGTTCAAGTCTGCTCAGGCTCTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAACTGAAGGTCAAGCCCACATGTTCAACCTTAACCTTGACCCTTCCACAACAAACCCTAACCACAACTCAACCTCATCTTGGTCCTTGTTACCACCATCTTCTTCATCTTCACCTACTCTCAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTCCCTCACCTTCTTCTGAGTTCAAGAGATGGGTTGTTGTGGATGGCATTCTGTTAAACCCTTTGAGCACAAACACCCCAGAGCACTCTAAGTCAAAGATTCCAGAATCTGGAGAACATGATCATGCTTTTGCAAGAGAAGATGGGTGCACAGTGTTGAAGAAAGGAGAAATTCTGAGGATGGATTTGGAGATAGGTTTGCCTAGAACTTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 684 0.4444 MKRNNFMKDYANNNPSSKDFTHVVNCYKNHNQMAKELCNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTEGQAHMFNLNLDPSTTNPNHNSTSSWSLLPPSSSSSPTLKPVTCTLPLFVSPTPPSPSSEFKRWVVVDGILLNPLSTNTPEHSKSKIPESGEHDHAFAREDGCTVLKKGEILRMDLEIGLPRTYDLDLELRLGTTYS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02480 227 Gene3D Classic Zinc Finger 51 100 - -
Viun5g02480 227 MobiDBLite consensus disorder prediction 91 123 - -
Viun5g02480 227 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Viun5g02480 227 PANTHER OS07G0101800 PROTEIN 37 224 - -
Viun5g02480 227 Pfam C2H2-type zinc finger 55 79 - -
Viun5g02480 227 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Viun5g02480 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Viun5g02480 227 SMART c2h2final6 55 77 IPR013087 -
Viun5g02480 227 MobiDBLite consensus disorder prediction 82 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02480 Viun-Chr5 35489609 35490631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02480 38 223 C2H2 Transcription Factor Family AT3G23130 43.005 8.98e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g02480 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02480 - - var:108333719 376.711