Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02467 ATGAATAATTTTTCTGTGATGTTATTTAAATTTTGGCCCATATATATCCCCCTCATCTCTCTCTTGGCATTGAACGCAAACATCAACGTATTTGCCTTAGGAGATGAGACTGATCACCTGTCATTGCTGAAATTCAAGGAATCCATATCTACTGATCCATATGGAATGTTGCTCTCTTGGAACACTTCTACTCACTTCTGTAATTGGCACGGAATCACATGCAATCTCACGCTTCAAAGAGTTACAGGCTTGAACTTGCATGGATACAAGTTGAAGGGATCCATATCTCCTTATGTAGGCAATCTCTCTCATTTGAGAATATTTGACCTTGGAAACAACAGCTTCCATGGCAAAATCCCTCCAGAATTGGGACGCTTGTCACAACTGCGGCTACTCTCTGTTGGAAATAACTCATTGGAAGGGAAAATTCCTACAAACTTGACGGGTTGCACTAGCCTCAAACGCTTAAGGTTGCATGGGAACAATCTCATTGGTGAAATTCCAATTCAAATCGGTTCACTTCGGAAGCTTCAATATTTGCTGCTCTATAACAACTGGTTAACCGGGGGAATCCCATCATTCTTAGGTAATCTTTTATCCCTAACTGTTCTCTCTGTGGGTACTAACAACTTAGGGGGAGATATTCCACAAGAACTATGCAATCTCAAACACTTGTTCTTTTTATCACTTCCTGTAAGCAACCTCACTGGAACATTTCCTTCTTGTCTTTATAATATTTCATCTCTTGTTGCAATCTCAGCTACAAAAAACCAGCTTAATGGTTCTCTTCCACCTAACATGTTTCACACCCTCCCCAATCTCCAAGTACTAGAACTTAGTGAAAATAAATTCTCAGGACCAATCCCACCCTCCATCACAAACTCATCTTTACTTTATATATTTGATTTGAGTTATAACCATTTTGTGGGACAAGTTCCAAGTCTGGGAAAGCTACAACATGTTTTCCTTTTGTCATTTTCTTCAAACAATCTTGGTAACAATTCAACTTATGATTTGGAGTTTCTGAAAACATTGACAAATTGTAGTGAGTTGCATGAGTTAGGTATATCCAATAATAACTTTGGAGGTCATTTACCTGATACCATGGGAAACTTATCCACTCAGCTCAGTCAACTAGCTCTTGGGGGTAATCAAATATCAGGAAAAATCCCTGCATCAATAGGAAATCTAGTTGACTTAACTCTCTTGACTATGTATGATAACCGCATGGAAGGGATTATCCCAACAACTTTTGGGAAGTTTCGAAAAATGGAAGTGTTAGGCTTAAGGGGAAACAAATTGTCGGGAGAAATAGGAGCCTTCATAGGCAACCTTAGTCATCTGTTCTATTTGGAAATGAGTGCAAATATGTTAGAAGGGACTATTCCTCCAAGCATAGGATATTGCCAGAAGTTACAATACTTAAGCCTTGCACAAAACAACCTTAAAGGAACAATACCCTTTGAGGTTTTTCATCTTTCCTCTCTGACAATCTACCTGGATTTGTCAGAAAATTCATTGAGTGGCTACATATCTAAAGAAGTGGGAAACCTTAAAAACATTGATATTCTAGATATGTCTAAGAATCATTTGTCTGGAGACATTCCTGGAACTATTGCGGAATGCATAATGTTGGAGTACCTGTTTTTGCAAGGTAATTCTTTAGATGGAATCATACCATTCTCTTTGGCATCACTCAAAGGTCTTCGGAGTTTAGACTTGTCACAAAATCGCTTGTCTGGGTCAATTCCACATGTTCTACAAAACATTTCTTTCTTGGAATATTTCAATGTATCGTATAACATGTTAGAGGGTGAGGTACCAACTGAAGGTGTGTTTCGGAATGCAAGTGAGGTGGTGGTGACTGGAAATAGTAAGCTTTGTGGGGGCATTTCAGAATTGCATCTGCCACCATGCCCTGTCAAAGGTAAGAAACTTGTAAAACACCACAAGTTTAGGCTGATACCAGTGTTAGTTAGTGTGATTGTTTTTCTTCTCATACTGTCAATTACTCTAACTTTCTACTGGATGAGGAAAAGGAGTAAGAAATCATCTTTGGATTCTCCAACAATTGACCAGTTGGCTAAAGTTTCATACCAGAGCTTACACAATGCAACAGATGGTTTCTCAACTACAAACTTGATAGGGTCTGGAAATTTTAGCTCTGTCTATAAAGGCACTCTTGAGTTAGAAGACAAAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAGAAAAGGAGCTCCAAAGAGTTTCTTTGCTGAATGCAATGCGCTTAAAAATGTTAAACATCGAAATCTGGTTCCAATTTTAACATGTTGTTCCAGCACAGATTACAAAGGTCAAGAATTTAAAGCTCTAATTTTTGAGTACATGAAAAATGGGAGTTTAGAGCAATGGTTGCATCCGAGGACACTTGTAACAGATAATCCAAGAACATTGAAGCTCGACCAAAGATTAAATATCATGATTGATGTTGCTTCAGCATTGCATTATCTTCATCATGAATGTGAGCAATCTATAATCCATTGTGATTTGAAGCCAAACAATGTCCTCCTTGATGATAACATGATCGCCCATGTGAGTGATTTTGGCATAGCAAGACTTCTGTCAACTATCAACAATAAGAAATCAAGTACACTAGGCATAAAAGGGACGATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCAGAGGTGTCTATGACTGGAGATGTGTATAGCTTTGGGATACTTATGCTGGAAATGCTTACTGGAAGGAGACCTACAGATGAAATCTTTGAAGATGGTCAAAATTTGCATAACTTAGTAGCAAATTCATTCCCTGAAAATCTATTACAAATTTTGGATCCATTGCTTGTAGTAAAAGAAGCAGAAATAAGCACAGAAGAAGAAATTCAGAATCTTACTCCAACTACAGAAGAGTGCTTGGTTTCACTGTTCCATATTGGACTTGCTTGTGTAGCGGAATCACCAAAAGAAAGGATCAGTATGGTGGATGTTACTAGAGAGCTGAGTAAAATCAAAAGAGCCTTTATTTCTGGTAAAGTAAATAGAAAATGA 3060 0.381 MNNFSVMLFKFWPIYIPLISLLALNANINVFALGDETDHLSLLKFKESISTDPYGMLLSWNTSTHFCNWHGITCNLTLQRVTGLNLHGYKLKGSISPYVGNLSHLRIFDLGNNSFHGKIPPELGRLSQLRLLSVGNNSLEGKIPTNLTGCTSLKRLRLHGNNLIGEIPIQIGSLRKLQYLLLYNNWLTGGIPSFLGNLLSLTVLSVGTNNLGGDIPQELCNLKHLFFLSLPVSNLTGTFPSCLYNISSLVAISATKNQLNGSLPPNMFHTLPNLQVLELSENKFSGPIPPSITNSSLLYIFDLSYNHFVGQVPSLGKLQHVFLLSFSSNNLGNNSTYDLEFLKTLTNCSELHELGISNNNFGGHLPDTMGNLSTQLSQLALGGNQISGKIPASIGNLVDLTLLTMYDNRMEGIIPTTFGKFRKMEVLGLRGNKLSGEIGAFIGNLSHLFYLEMSANMLEGTIPPSIGYCQKLQYLSLAQNNLKGTIPFEVFHLSSLTIYLDLSENSLSGYISKEVGNLKNIDILDMSKNHLSGDIPGTIAECIMLEYLFLQGNSLDGIIPFSLASLKGLRSLDLSQNRLSGSIPHVLQNISFLEYFNVSYNMLEGEVPTEGVFRNASEVVVTGNSKLCGGISELHLPPCPVKGKKLVKHHKFRLIPVLVSVIVFLLILSITLTFYWMRKRSKKSSLDSPTIDQLAKVSYQSLHNATDGFSTTNLIGSGNFSSVYKGTLELEDKVVAIKVLNLQRKGAPKSFFAECNALKNVKHRNLVPILTCCSSTDYKGQEFKALIFEYMKNGSLEQWLHPRTLVTDNPRTLKLDQRLNIMIDVASALHYLHHECEQSIIHCDLKPNNVLLDDNMIAHVSDFGIARLLSTINNKKSSTLGIKGTIGYAPPEYGMGSEVSMTGDVYSFGILMLEMLTGRRPTDEIFEDGQNLHNLVANSFPENLLQILDPLLVVKEAEISTEEEIQNLTPTTEECLVSLFHIGLACVAESPKERISMVDVTRELSKIKRAFISGKVNRK 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02467 1019 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Viun5g02467 1019 Pfam Leucine rich repeat 545 603 IPR001611 GO:0005515
Viun5g02467 1019 FunFam LRR receptor-like serine/threonine-protein kinase EFR 680 790 - -
Viun5g02467 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Viun5g02467 1019 Gene3D Phosphorylase Kinase; domain 1 690 790 - -
Viun5g02467 1019 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 337 - -
Viun5g02467 1019 Gene3D Ribonuclease Inhibitor 35 317 IPR032675 -
Viun5g02467 1019 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 791 1017 - -
Viun5g02467 1019 Gene3D Transferase(Phosphotransferase) domain 1 791 1016 - -
Viun5g02467 1019 SMART LRR_sd22_2 566 592 - -
Viun5g02467 1019 SMART LRR_sd22_2 469 490 - -
Viun5g02467 1019 SMART LRR_sd22_2 126 149 - -
Viun5g02467 1019 SMART LRR_sd22_2 198 224 - -
Viun5g02467 1019 SMART LRR_typ_2 198 222 IPR003591 -
Viun5g02467 1019 SMART LRR_typ_2 397 420 IPR003591 -
Viun5g02467 1019 SMART LRR_typ_2 445 469 IPR003591 -
Viun5g02467 1019 SMART LRR_typ_2 566 589 IPR003591 -
Viun5g02467 1019 SMART LRR_typ_2 271 295 IPR003591 -
Viun5g02467 1019 SMART LRR_typ_2 102 126 IPR003591 -
Viun5g02467 1019 SUPERFAMILY L domain-like 36 331 - -
Viun5g02467 1019 Pfam Protein kinase domain 711 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02467 1019 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Viun5g02467 1019 PANTHER OS04G0122200 PROTEIN 105 229 - -
Viun5g02467 1019 SMART serkin_6 709 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02467 1019 SUPERFAMILY Protein kinase-like (PK-like) 683 1004 IPR011009 -
Viun5g02467 1019 ProSiteProfiles Protein kinase domain profile. 709 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02467 1019 FunFam LRR receptor-like serine/threonine-protein kinase EFR 338 645 - -
Viun5g02467 1019 CDD STKc_IRAK 715 1007 - -
Viun5g02467 1019 SUPERFAMILY L domain-like 345 629 - -
Viun5g02467 1019 Gene3D Ribonuclease Inhibitor 318 646 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02467 Viun-Chr5 35206086 35209455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02467 35 1011 Receptor kinase-like Gene Family AT3G47570 45.610 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun5g02467 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02467 - - gmx:100801459 1464.51