Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02461 ATGGTGAATCAGCGTTCCAGAATGGAAGAAGAACTAGTCAAAGGGCGAGACATAGCAAACCAGTTACTTGAACTGTGTGTTCACAGATCCAACAGTCACCATCATCATCATGAAGATGTAAAAGGGTCAATGCTTCCCTTTATTGAAGATCTTGTGCGCAAGGTGCTGTGTTCATTCACAAACACCCTTTTGCTTTTGAACAATGATAATGATGTCTCTAATGAGGTTGCTGTTTCTATGACTGTCAAAGATGTTCCTCCATTCTCCAAATGTCCAAACCCTCACCATACTGATGAGGTTTGCAAGGGTTTCTTCCAAACTAAAAAACCAAGAGGGTCCTACAAGAGAAAATCAAGTGCACCAACATGGGTGACAAACAGCTCAATCCTGGTGGAAGATGGCTATGTATGGAGAAAGTATGGACAAAAGATAACAACAAATGCAAAATACCTCAGGAGCTACTATAGATGCACTCACAAACATGACAAAGGTTGTCCTGCAATCAAACAGGTCCAGAGAATTCAAGAAGATCCTCCATTGTACCAGACAACATATTATGGTCATCACAATTGCAAAAGCTTTTCAAGTTCAGATATAGTGATGGAATCAGCTTCTCCTTCTGCCTCTTCTGTGTTCCTTAGCTTCAGTAACACCTTGCCAACCAAGGAACAATACCAATTACAGACATCTTCAGTTTCTTCATCCATGAAACAGGAGCCAGTGGAAGTGATTCAGGATGAGCTTATTGCTGATCAAAGCCTATTAGCCTCATCAGATTACCTTCTGTTATGTGACTACGAACATGATTTCATTTCAATTACTTGA 825 0.4048 MVNQRSRMEEELVKGRDIANQLLELCVHRSNSHHHHHEDVKGSMLPFIEDLVRKVLCSFTNTLLLLNNDNDVSNEVAVSMTVKDVPPFSKCPNPHHTDEVCKGFFQTKKPRGSYKRKSSAPTWVTNSSILVEDGYVWRKYGQKITTNAKYLRSYYRCTHKHDKGCPAIKQVQRIQEDPPLYQTTYYGHHNCKSFSSSDIVMESASPSASSVFLSFSNTLPTKEQYQLQTSSVSSSMKQEPVEVIQDELIADQSLLASSDYLLLCDYEHDFISIT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02461 274 Pfam WRKY DNA -binding domain 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02461 274 ProSiteProfiles WRKY domain profile. 126 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02461 274 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 49 215 IPR044810 GO:0003700
Viun5g02461 274 SUPERFAMILY WRKY DNA-binding domain 126 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g02461 274 Gene3D WRKY domain 108 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g02461 274 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02461 Viun-Chr5 34977385 34978578 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02461 4 193 WRKY Transcription Factor Family AT3G56400 35.751 9.74e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g02461 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02461 - - vra:106778123 355.91