Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02459 ATGGGGAGTGAGTTTTCAAATGGAAAAAAGGCAATGGAAGAAGAATTGATGAGAGGGCGTGACATGGCAAACCAGTTACTTGAAGCACTTGGTCATGATAAATTGAACACTCATCTTCAACATGAGGATAGGTCAAAGTCAGTGTTACCATTTGTTGAAGATCTTGTTCGCAAGGTCTTGTGCTCATTCACCAACACTCTTTTGCTTTTGAACTCCAATCAACTCACACCGTCTCTCTCATCATCAACCAATTGCCCTCAGATCGAGTCTCTGCTTCAAACCTGCAAGAGTCGCAAAATTCTCAACCCTAATAATCGAAGAAGGTGCTACAAAAGAAAATCAATTTCGCCAACTTGGGAGAAGGACAGCTCCATACTGATTGAAGATGGCTATGCATGGAGAAAGTACGGACAAAAAATGACATTGCACGCAAAATACCTAAGGAGCTACTACAGGTGCACATACAAGAATGATCAAAGATGCTCAGCAATGAAACAGGTGCAGAGGATTCAAGATGATCCTCCATTGTACCGAACAACCTATTACGGCCATCACACTTGTCGAAGCCCTTCGAATCCCGAGATTATTTTGGAACCTCTTTCTCCTTCTGCATCTTCCACGTTACTTAGCTTTAATAACAGCCTTCATAGTAAACAAGAAAACCCGTTTCCCTCGCCACTACTTGCATCAATCAAGCAGGAGCCTCAGAAAGTGATTCGCGATGAACATTGTGCTCAGAACCAGTTGTCTGCGTTAGAGAACCTCCTATTATACGATTATGATGTTTCTTTTGATTATTCGAGGAATGCCACTTTCCTGTCGTCGGGTGAACCCGTTCAATTTGAGGATGTTTGTGGACAGTTTGGATTTTGA 873 0.4238 MGSEFSNGKKAMEEELMRGRDMANQLLEALGHDKLNTHLQHEDRSKSVLPFVEDLVRKVLCSFTNTLLLLNSNQLTPSLSSSTNCPQIESLLQTCKSRKILNPNNRRRCYKRKSISPTWEKDSSILIEDGYAWRKYGQKMTLHAKYLRSYYRCTYKNDQRCSAMKQVQRIQDDPPLYRTTYYGHHTCRSPSNPEIILEPLSPSASSTLLSFNNSLHSKQENPFPSPLLASIKQEPQKVIRDEHCAQNQLSALENLLLYDYDVSFDYSRNATFLSSGEPVQFEDVCGQFGF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02459 290 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 207 IPR044810 GO:0003700
Viun5g02459 290 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02459 290 Coils Coil 9 29 - -
Viun5g02459 290 ProSiteProfiles WRKY domain profile. 122 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02459 290 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02459 290 Gene3D WRKY domain 113 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g02459 290 SUPERFAMILY WRKY DNA-binding domain 124 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02459 Viun-Chr5 34910872 34912474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02459 22 189 WRKY Transcription Factor Family AT3G56400 41.808 2.80e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g02459 WRKY 1.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02459 - - gmx:100792193 404.831