Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02458 ATGGTGTCTGTCTCTCTGTTTGGCGGCCATAACAGGAATAGTGTTATGCCAAGAAGGAAAATGGAGAATCAGATTCCAAATGGCAAAAGGGCAATGGAAGAAGAGCTGAACAGAGGGCGTGACATGGCAAATCAGTTGCTTGAAGTTCTTGCTTATGACAAATCCATCACTCATCTTCAAAAGGAAGAAGAAGAAGGGTCAAACTCAGTGTTACCATTTGTTGAAGATCTTGTGCGCAAGGTTCTGTGTTCATTCACGAACACCCTTCTGCTTTTGAACTCCACCAACGATGTTTCCCATGAGGTGGTGGCTTCCATCACTCTCAGAGATGTCTCTTCTTCCACCACCACTTCCCCAAAGAAGTTGGAGTCTGTGGATGAAATTTGCAAGAGTCGCAAAATTCTCAGCACTGAAAACCGAAGAAGAGGCTACAAGAGAAAATCAATTGCTCCAAGTTGGGAGAAGGACAGCTCCATACTAGTTGAAGATGGCTATGTATGGAGAAAATATGGACAGAAAATGACATTGAACGCCAAATACCTCAGGAGCTACTACAGGTGCACTCACAAGAATGATCAGGGATGTCATGCAATGAAACAGGTGCAGAGAATTCAAGATGTTCCTCCTTTGTACCGAACAACCTATTACGGCCATCACACATGTAAAAGCCCTATGAATCCTGAGATTGTTCTGGAACCTCTTTCTCCTTCTGGATCTTCCACGTTACTTAGCTTTAGTAACAGCTTTCATTGCAAACAAGAAAACCCGTTTCCCTCATCACTACTTGCTTCAACCAAACATGCTCACAATCAATTATCCTCTCTCGAAGACCTCTTATTACATGATTGTGAAGTTGATTGCAATTATTCTAGGCGTGTGGCTAATAGCATGCTATCATCTGCTGAATCCGTTGAATTTGAGAATGTTTTTATGAGCAGTTTGGATTTTGTTGGCTAG 957 0.4242 MVSVSLFGGHNRNSVMPRRKMENQIPNGKRAMEEELNRGRDMANQLLEVLAYDKSITHLQKEEEEGSNSVLPFVEDLVRKVLCSFTNTLLLLNSTNDVSHEVVASITLRDVSSSTTTSPKKLESVDEICKSRKILSTENRRRGYKRKSIAPSWEKDSSILVEDGYVWRKYGQKMTLNAKYLRSYYRCTHKNDQGCHAMKQVQRIQDVPPLYRTTYYGHHTCKSPMNPEIVLEPLSPSGSSTLLSFSNSFHCKQENPFPSSLLASTKHAHNQLSSLEDLLLHDCEVDCNYSRRVANSMLSSAESVEFENVFMSSLDFVG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02458 318 Gene3D WRKY domain 130 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g02458 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 37 249 IPR044810 GO:0003700
Viun5g02458 318 SMART WRKY_cls 161 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02458 318 ProSiteProfiles WRKY domain profile. 156 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02458 318 Pfam WRKY DNA -binding domain 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02458 318 SUPERFAMILY WRKY DNA-binding domain 158 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02458 Viun-Chr5 34902713 34904953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02458 35 223 WRKY Transcription Factor Family AT3G56400 38.421 1.64e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g02458 WRKY 3.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02458 - - var:108332714 551.206